NUBPL (NUBP iron-sulfur cluster assembly factor, mitochondrial) - Rat Genome Database

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Gene: NUBPL (NUBP iron-sulfur cluster assembly factor, mitochondrial) Pan paniscus
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Symbol: NUBPL
Name: NUBP iron-sulfur cluster assembly factor, mitochondrial
RGD ID: 11941316
Description: ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); mitochondrion organization (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH autosomal recessive axonal Charcot-Marie-Tooth disease with vocal cord paresis (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN mitochondrion (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: iron-sulfur cluster transfer protein NUBPL; iron-sulfur protein NUBPL; iron-sulfur protein NUBPL-like; nucleotide binding protein like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,890,880 - 33,180,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11432,107,388 - 32,397,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,338,341 - 12,628,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,534,997 - 30,822,227 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NUBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,890,880 - 33,180,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11432,107,388 - 32,397,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,338,341 - 12,628,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,534,997 - 30,822,227 (+)NCBIpanpan1.1PanPan1.1panPan2
NUBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,561,404 - 31,861,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1431,489,956 - 31,861,224 (+)EnsemblGRCh38hg38GRCh38
GRCh371432,030,610 - 32,330,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361431,100,342 - 31,400,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 341431,100,428 - 31,399,259NCBI
Celera1411,895,904 - 12,195,785 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,147,896 - 12,447,827 (+)NCBIHuRef
CHM1_11432,029,883 - 32,329,829 (+)NCBICHM1_1
T2T-CHM13v2.01425,758,636 - 26,058,537 (+)NCBIT2T-CHM13v2.0
Nubpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,144,529 - 52,357,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,144,520 - 52,359,527 (+)EnsemblGRCm39 Ensembl
GRCm381252,097,746 - 52,310,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,097,737 - 52,312,744 (+)EnsemblGRCm38mm10GRCm38
MGSCv371253,198,733 - 53,411,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361253,019,357 - 53,234,357 (+)NCBIMGSCv36mm8
Celera1253,404,089 - 53,607,597 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.11NCBI
Nubpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,294,609 - 75,516,603 (+)NCBIGRCr8
mRatBN7.2669,559,278 - 69,781,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,559,291 - 69,781,253 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,990,443 - 70,205,300 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,297,085 - 70,511,949 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,736,622 - 69,951,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,891,758 - 73,147,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0682,453,631 - 82,517,904 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0682,557,115 - 82,709,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4672,264,459 - 72,306,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1672,267,584 - 72,479,338 (+)NCBI
Celera668,435,325 - 68,646,422 (+)NCBICelera
Cytogenetic Map6q23NCBI
Nubpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540928,872,189 - 29,073,206 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540928,873,609 - 29,073,196 (-)NCBIChiLan1.0ChiLan1.0
NUBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,796,462 - 11,026,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,796,459 - 11,090,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,659,000 - 10,889,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,898,957 - 11,129,569 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,898,349 - 11,129,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,580,802 - 10,814,041 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,664,161 - 10,894,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,942,563 - 11,173,068 (+)NCBIUU_Cfam_GSD_1.0
Nubpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,635,534 - 42,858,568 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364946,141,476 - 6,363,830 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364946,141,444 - 6,365,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl767,784,639 - 68,028,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1767,785,652 - 68,028,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2772,498,664 - 72,573,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Nubpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820567,217 - 791,817 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624820562,180 - 767,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003821202   ⟹   XP_003821250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,890,880 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,107,391 - 32,397,542 (+)NCBI
Mhudiblu_PPA_v01412,338,342 - 12,628,346 (+)NCBI
PanPan1.11430,534,997 - 30,822,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008974688   ⟹   XP_008972936
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,890,884 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,107,390 - 32,397,542 (+)NCBI
Mhudiblu_PPA_v01412,338,341 - 12,627,249 (+)NCBI
PanPan1.11430,535,002 - 30,822,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034937397   ⟹   XP_034793288
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,907,362 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,123,881 - 32,397,543 (+)NCBI
Mhudiblu_PPA_v01412,354,832 - 12,628,346 (+)NCBI
RefSeq Acc Id: XM_034937398   ⟹   XP_034793289
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,928,869 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,145,369 - 32,397,542 (+)NCBI
Mhudiblu_PPA_v01412,376,312 - 12,628,346 (+)NCBI
RefSeq Acc Id: XM_034937399   ⟹   XP_034793290
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,928,831 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,145,334 - 32,397,542 (+)NCBI
Mhudiblu_PPA_v01412,376,275 - 12,628,346 (+)NCBI
RefSeq Acc Id: XM_034937400   ⟹   XP_034793291
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21533,003,036 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,219,534 - 32,397,543 (+)NCBI
Mhudiblu_PPA_v01412,450,391 - 12,628,346 (+)NCBI
RefSeq Acc Id: XM_034937401   ⟹   XP_034793292
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,928,830 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,145,333 - 32,397,543 (+)NCBI
Mhudiblu_PPA_v01412,376,274 - 12,628,346 (+)NCBI
RefSeq Acc Id: XM_055097457   ⟹   XP_054953432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21532,890,883 - 33,162,529 (+)NCBI
NHGRI_mPanPan11432,107,388 - 32,378,998 (+)NCBI
RefSeq Acc Id: XM_055097458   ⟹   XP_054953433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21533,059,701 - 33,180,961 (+)NCBI
NHGRI_mPanPan11432,276,209 - 32,397,543 (+)NCBI
RefSeq Acc Id: XP_003821250   ⟸   XM_003821202
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008972936   ⟸   XM_008974688
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034793288   ⟸   XM_034937397
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034793292   ⟸   XM_034937401
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034793290   ⟸   XM_034937399
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034793289   ⟸   XM_034937398
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034793291   ⟸   XM_034937400
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054953432   ⟸   XM_055097457
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054953433   ⟸   XM_055097458
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
NCBI Gene NUBPL ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-21 NUBPL  NUBP iron-sulfur cluster assembly factor, mitochondrial  NUBPL  nucleotide binding protein like  Symbol and/or name change 5135510 APPROVED