CCDC180 (coiled-coil domain containing 180) - Rat Genome Database

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Gene: CCDC180 (coiled-coil domain containing 180) Pan paniscus
Analyze
Symbol: CCDC180
Name: coiled-coil domain containing 180
RGD ID: 11938965
Description: ENCODES a protein that exhibits retinol transmembrane transporter activity (inferred); signaling receptor activity (inferred); INVOLVED IN retinol transport (inferred); ASSOCIATED WITH breast ductal carcinoma (ortholog); intellectual disability (ortholog); intracranial aneurysm (ortholog); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 180
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,076,005 - 42,166,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1942,078,381 - 42,169,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0968,380,995 - 68,467,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1996,502,976 - 96,589,386 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl996,503,785 - 96,589,386 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CCDC180
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,076,005 - 42,166,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1942,078,381 - 42,169,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0968,380,995 - 68,467,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1996,502,976 - 96,589,386 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl996,503,785 - 96,589,386 (+)Ensemblpanpan1.1panPan2
CCDC180
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38997,307,337 - 97,378,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl997,307,304 - 97,378,751 (+)EnsemblGRCh38hg38GRCh38
GRCh379100,069,619 - 100,141,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera970,584,270 - 70,653,930 (+)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef969,671,158 - 69,740,837 (+)NCBIHuRef
CHM1_19100,216,353 - 100,286,011 (+)NCBICHM1_1
T2T-CHM13v2.09109,479,282 - 109,550,710 (+)NCBIT2T-CHM13v2.0
Ccdc180
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,890,303 - 45,950,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,890,303 - 45,950,774 (+)EnsemblGRCm39 Ensembl
GRCm38445,890,303 - 45,950,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,890,303 - 45,950,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv37445,903,175 - 45,963,646 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera445,911,888 - 45,972,296 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map424.42NCBI
Ccdc180
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,950,522 - 65,019,127 (+)NCBIGRCr8
mRatBN7.2560,154,883 - 60,223,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl560,154,910 - 60,223,522 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0561,467,799 - 61,542,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl561,474,000 - 61,542,653 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,988,737 - 66,057,667 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera558,713,212 - 58,785,674 (+)NCBICelera
Cytogenetic Map5q22NCBI
Ccdc180
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,002,011 - 28,066,373 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,002,063 - 28,066,145 (-)NCBIChiLan1.0ChiLan1.0
CCDC180
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,676,397 - 54,740,783 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1154,675,979 - 54,740,428 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,104,382 - 53,171,677 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,788,214 - 55,856,241 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11154,285,238 - 54,352,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,315,302 - 54,382,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01155,011,900 - 55,079,190 (+)NCBIUU_Cfam_GSD_1.0
Ccdc180
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947169,620,678 - 169,683,391 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365246,168,938 - 6,230,925 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365246,168,334 - 6,230,934 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,209,387 - 239,270,803 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,207,628 - 239,275,402 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21267,264,161 - 267,327,361 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC180
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,018,614 - 42,154,983 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603839,075,026 - 39,145,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc180
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248253,395,735 - 3,447,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248253,395,694 - 3,447,623 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000010882   ⟹   ENSPPAP00000002213
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl996,503,785 - 96,589,347 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000010927   ⟹   ENSPPAP00000002217
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl996,503,785 - 96,589,347 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000010940   ⟹   ENSPPAP00000002223
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl996,520,103 - 96,589,386 (+)Ensembl
RefSeq Acc Id: XM_034967842   ⟹   XP_034823733
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,166,640 (-)NCBI
NHGRI_mPanPan1942,079,623 - 42,169,018 (-)NCBI
Mhudiblu_PPA_v0968,381,647 - 68,467,754 (+)NCBI
RefSeq Acc Id: XM_055117824   ⟹   XP_054973799
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,076,005 - 42,165,890 (-)NCBI
NHGRI_mPanPan1942,078,381 - 42,168,289 (-)NCBI
RefSeq Acc Id: XM_055117825   ⟹   XP_054973800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,149,856 (-)NCBI
NHGRI_mPanPan1942,079,623 - 42,152,234 (-)NCBI
RefSeq Acc Id: XM_055117826   ⟹   XP_054973801
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,149,856 (-)NCBI
NHGRI_mPanPan1942,079,623 - 42,152,234 (-)NCBI
RefSeq Acc Id: XM_063594283   ⟹   XP_063450353
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,165,890 (-)NCBI
RefSeq Acc Id: XM_063594284   ⟹   XP_063450354
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,149,857 (-)NCBI
RefSeq Acc Id: XM_063594285   ⟹   XP_063450355
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21142,080,503 - 42,149,839 (-)NCBI
RefSeq Acc Id: XP_034823733   ⟸   XM_034967842
- Peptide Label: isoform X7
- UniProtKB: A0A2R8ZHQ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000002223   ⟸   ENSPPAT00000010940
Ensembl Acc Id: ENSPPAP00000002217   ⟸   ENSPPAT00000010927
Ensembl Acc Id: ENSPPAP00000002213   ⟸   ENSPPAT00000010882
RefSeq Acc Id: XP_054973799   ⟸   XM_055117824
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZAZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054973800   ⟸   XM_055117825
- Peptide Label: isoform X5
- UniProtKB: A0A2R8ZB03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054973801   ⟸   XM_055117826
- Peptide Label: isoform X6
- UniProtKB: A0A2R8ZHQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450353   ⟸   XM_063594283
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZAZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450354   ⟸   XM_063594284
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZB03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450355   ⟸   XM_063594285
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZB03 (UniProtKB/TrEMBL)
Protein Domains
DUF4455   DUF4456


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009246 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010882.1 UniProtKB/TrEMBL
  ENSPPAT00000010927.1 UniProtKB/TrEMBL
  ENSPPAT00000010940.1 UniProtKB/TrEMBL
InterPro DUF4455 UniProtKB/TrEMBL
  DUF4456 UniProtKB/TrEMBL
  STRA6-like UniProtKB/TrEMBL
NCBI Gene CCDC180 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  PTHR21444:SF14 UniProtKB/TrEMBL
Pfam DUF4455 UniProtKB/TrEMBL
  DUF4456 UniProtKB/TrEMBL
  RBP_receptor UniProtKB/TrEMBL
UniProt A0A2R8ZAZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZB03 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZHQ4 ENTREZGENE, UniProtKB/TrEMBL