PALLD (palladin, cytoskeletal associated protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PALLD (palladin, cytoskeletal associated protein) Pan paniscus
Analyze
Symbol: PALLD
Name: palladin, cytoskeletal associated protein
RGD ID: 11938662
Description: ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to hypoxia (ortholog); epithelial cell morphogenesis (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100987582; LOC103786652; LOC112439615; palladin; palladin-like
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23166,273,693 - 166,697,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14166,787,075 - 167,052,445 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04160,718,475 - 161,140,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14173,120,958 - 173,216,409 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PALLD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23166,273,693 - 166,697,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14166,787,075 - 167,052,445 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04160,718,475 - 161,140,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14173,120,958 - 173,216,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PALLD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384168,497,052 - 168,928,441 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4168,497,052 - 168,928,457 (+)EnsemblGRCh38hg38GRCh38
GRCh374169,418,203 - 169,849,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364169,654,792 - 170,086,183 (+)NCBINCBI36Build 36hg18NCBI36
Celera4166,748,020 - 167,180,983 (+)NCBICelera
Cytogenetic Map4q32.3NCBI
HuRef4165,170,970 - 165,603,126 (+)NCBIHuRef
CHM1_14169,394,774 - 169,826,047 (+)NCBICHM1_1
T2T-CHM13v2.04171,856,045 - 172,287,862 (+)NCBIT2T-CHM13v2.0
Palld
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39861,964,465 - 62,355,741 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl861,964,467 - 62,355,724 (-)EnsemblGRCm39 Ensembl
GRCm38861,511,431 - 61,902,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,511,433 - 61,902,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37863,993,818 - 64,381,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36864,403,398 - 64,794,832 (-)NCBIMGSCv36mm8
Celera864,078,203 - 64,475,199 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map831.23NCBI
Palld
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81633,238,943 - 33,632,236 (+)NCBIGRCr8
mRatBN7.21628,228,006 - 28,621,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1627,981,354 - 28,621,337 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01631,865,712 - 31,948,168 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1631,734,944 - 31,946,242 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01631,401,114 - 31,786,201 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41631,854,459 - 31,933,792NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1628,535,132 - 28,616,857 (+)NCBICelera
Cytogenetic Map16p12NCBI
PALLD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12519,147,310 - 19,568,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2519,146,898 - 19,553,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2519,178,454 - 19,599,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02519,285,396 - 19,694,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2519,285,412 - 19,694,079 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12519,146,258 - 19,574,549 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02519,153,183 - 19,562,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02519,215,651 - 19,637,403 (+)NCBIUU_Cfam_GSD_1.0
Palld
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494320,372,101 - 20,739,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936516802,484 - 1,151,801 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936516786,358 - 1,151,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PALLD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1420,678,452 - 21,020,125 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11420,678,456 - 21,020,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,965,285 - 22,200,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PALLD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17114,758,017 - 115,173,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603794,642,207 - 95,083,209 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Palld
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624769150,738 - 559,045 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624769150,800 - 560,163 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034959389   ⟹   XP_034815280
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23166,600,837 - 166,697,100 (+)NCBI
NHGRI_mPanPan14166,956,137 - 167,052,445 (+)NCBI
Mhudiblu_PPA_v04161,044,188 - 161,140,436 (+)NCBI
RefSeq Acc Id: XM_034959390   ⟹   XP_034815281
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23166,600,838 - 166,697,100 (+)NCBI
NHGRI_mPanPan14166,956,138 - 167,052,445 (+)NCBI
Mhudiblu_PPA_v04161,044,176 - 161,140,436 (+)NCBI
RefSeq Acc Id: XM_063603981   ⟹   XP_063460051
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23166,273,693 - 166,697,100 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034815280 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815281 (Get FASTA)   NCBI Sequence Viewer  
  XP_063460051 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040175.1
  ENSPPAP00000040177.1
Reference Protein Sequences
RefSeq Acc Id: XP_034815281   ⟸   XM_034959390
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034815280   ⟸   XM_034959389
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460051   ⟸   XM_063603981
- Peptide Label: isoform X1
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042740 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063089.1 UniProtKB/TrEMBL
  ENSPPAT00000063091.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Palladin_C UniProtKB/TrEMBL
KEGG Report pps:100987582 UniProtKB/TrEMBL
NCBI Gene LOC100987582 ENTREZGENE
PANTHER CONTACTIN 5 UniProtKB/TrEMBL
  MYOTILIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9CE08_PANPA UniProtKB/TrEMBL
  A0A2R9CP74_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 PALLD  palladin, cytoskeletal associated protein  LOC112439615  palladin-like  Data merged from RGD:13564971 737654 PROVISIONAL
2020-06-11 PALLD  palladin, cytoskeletal associated protein  LOC103786652  palladin-like  Data merged from RGD:11862554 737654 PROVISIONAL
2018-05-08 PALLD  palladin, cytoskeletal associated protein  LOC100987582  palladin  Symbol and/or name change 5135510 APPROVED