LIPE (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 20 | 48,506,457 - 48,534,733 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 50,375,028 - 50,400,941 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 39,289,162 - 39,315,067 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 47,881,292 - 47,907,066 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 19 | 47,881,292 - 47,907,066 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LIPE (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 42,401,514 - 42,427,388 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 42,401,497 - 42,427,388 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 42,905,666 - 42,931,540 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 47,597,506 - 47,623,418 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 19 | 47,597,505 - 47,623,418 | NCBI | | | | | Celera | 19 | 39,706,455 - 39,732,367 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | q13.2 | NCBI | | | | | HuRef | 19 | 39,335,797 - 39,361,703 (-) | NCBI | | HuRef | | | CHM1_1 | 19 | 42,907,316 - 42,933,231 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 45,220,900 - 45,246,776 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lipe (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 7 | 25,078,952 - 25,097,911 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 25,078,952 - 25,098,135 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 7 | 25,379,527 - 25,398,486 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 25,379,527 - 25,398,710 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 7 | 26,164,546 - 26,181,006 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 7 | 25,088,287 - 25,104,747 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 7 | 19,994,853 - 20,011,313 (-) | NCBI | | Celera | | | Cytogenetic Map | 7 | A3 | NCBI | | | | | cM Map | 7 | 13.78 | NCBI | | | | |
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Lipe (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 90,093,433 - 90,112,117 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 80,965,612 - 80,984,313 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 80,965,627 - 80,984,310 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 86,357,834 - 86,376,510 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 94,909,045 - 94,927,749 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 88,113,613 - 88,132,294 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 82,248,031 - 82,266,727 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 82,248,046 - 82,266,727 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 83,511,504 - 83,530,200 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 80,663,791 - 80,682,480 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 80,741,901 - 80,760,591 (-) | NCBI | | | | | Celera | 1 | 75,407,246 - 75,425,931 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q21 | NCBI | | | | |
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Lipe (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955555 | 514,410 - 530,759 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955555 | 511,085 - 531,165 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LIPE (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 111,987,862 - 112,006,492 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 111,988,029 - 112,006,461 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 111,412,499 - 111,431,532 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 112,598,798 - 112,617,839 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 112,607,340 - 112,617,499 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 112,153,322 - 112,171,913 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 111,788,548 - 111,807,575 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 112,715,381 - 112,734,429 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lipe (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LIPE (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 49,540,708 - 49,560,125 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 49,543,671 - 49,560,126 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 45,443,742 - 45,454,621 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | | Pig Cytomap | 6 | q12 | NCBI | | | | |
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LIPE (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 6 | 36,604,822 - 36,630,648 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 6 | 36,605,126 - 36,630,376 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666073 | 14,849,833 - 14,875,994 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lipe (Heterocephalus glaber - naked mole-rat) |
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