ABCB7 (ATP binding cassette subfamily B member 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ABCB7 (ATP binding cassette subfamily B member 7) Pan paniscus
Analyze
Symbol: ABCB7
Name: ATP binding cassette subfamily B member 7
RGD ID: 11937527
Description: ENCODES a protein that exhibits ABC-type iron-sulfur cluster transporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular iron ion homeostasis (ortholog); iron ion homeostasis (ortholog); iron ion transmembrane transport (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster export pathway; ASSOCIATED WITH Ataxia (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP-binding cassette sub-family B member 7, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X74,418,754 - 74,521,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,418,754 - 74,521,726 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X64,304,101 - 64,407,310 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ABCB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X74,418,754 - 74,521,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,418,754 - 74,521,726 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X64,304,101 - 64,407,310 (-)NCBIMhudiblu_PPA_v0panPan3
ABCB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX75,051,048 - 75,156,732 (-)EnsemblGRCh38hg38GRCh38
GRCh38X75,051,048 - 75,156,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X74,270,883 - 74,376,118 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,189,830 - 74,292,857 (-)NCBINCBI36hg18NCBI36
Build 34X74,056,127 - 74,159,153NCBI
CeleraX74,556,536 - 74,659,552 (-)NCBI
Cytogenetic MapXq13.3NCBI
HuRefX67,906,559 - 68,010,008 (-)NCBIHuRef
CHM1_1X74,165,916 - 74,269,046 (-)NCBICHM1_1
Abcb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,324,171 - 103,457,452 (-)NCBIGRCm39mm39
GRCm39 EnsemblX103,324,263 - 103,457,462 (-)Ensembl
GRCm38X104,280,565 - 104,413,846 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,280,657 - 104,413,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,475,904 - 101,609,185 (-)NCBIGRCm37mm9NCBIm37
CeleraX91,172,735 - 91,305,783 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.58NCBI
Abcb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X69,295,598 - 69,436,775 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX69,295,552 - 69,436,858 (-)Ensembl
Rnor_6.0X75,150,511 - 75,291,950 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX75,150,608 - 75,291,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,954,591 - 76,094,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,280,115 - 92,430,426 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X92,353,547 - 92,503,859 (-)NCBI
CeleraX70,651,391 - 70,791,324 (-)NCBICelera
Cytogenetic MapXq22NCBI
Abcb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555621,077,198 - 1,221,061 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555621,079,884 - 1,220,806 (-)NCBIChiLan1.0ChiLan1.0
ABCB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X58,305,804 - 58,470,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX58,306,776 - 58,471,417 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX49,482,770 - 49,647,336 (-)NCBI
ROS_Cfam_1.0X59,542,308 - 59,707,158 (-)NCBI
UMICH_Zoey_3.1X57,230,770 - 57,395,118 (-)NCBI
UNSW_CanFamBas_1.0X58,850,296 - 59,014,604 (-)NCBI
UU_Cfam_GSD_1.0X58,448,856 - 58,613,397 (-)NCBI
Abcb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,621,036 - 43,722,688 (+)NCBI
SpeTri2.0NW_0049366831,224,703 - 1,326,761 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX59,998,607 - 60,313,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,186,559 - 60,313,098 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,395,504 - 68,522,015 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,633,989 - 64,748,638 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX64,634,079 - 64,701,938 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606716,958,476 - 17,074,666 (+)NCBIVero_WHO_p1.0
Abcb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248365,605,901 - 5,769,488 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039090   ⟹   ENSPPAP00000016395
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX74,418,754 - 74,521,726 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039104   ⟹   ENSPPAP00000016409
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX74,418,844 - 74,521,664 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039110   ⟹   ENSPPAP00000016415
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX74,432,900 - 74,521,664 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039119   ⟹   ENSPPAP00000016424
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX74,477,620 - 74,521,664 (-)Ensembl
RefSeq Acc Id: XM_003824395   ⟹   XP_003824443
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X74,418,754 - 74,521,726 (-)NCBI
Mhudiblu_PPA_v0X64,304,101 - 64,407,310 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978112   ⟹   XP_008976360
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X74,418,754 - 74,521,726 (-)NCBI
Mhudiblu_PPA_v0X64,304,101 - 64,407,309 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824443 (Get FASTA)   NCBI Sequence Viewer  
  XP_008976360 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008976360   ⟸   XM_008978112
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003824443   ⟸   XM_003824395
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000016395   ⟸   ENSPPAT00000039090
RefSeq Acc Id: ENSPPAP00000016424   ⟸   ENSPPAT00000039119
RefSeq Acc Id: ENSPPAP00000016415   ⟸   ENSPPAT00000039110
RefSeq Acc Id: ENSPPAP00000016409   ⟸   ENSPPAT00000039104


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031273 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000016395 ENTREZGENE
NCBI Gene ABCB7 ENTREZGENE