CFAP276 (cilia and flagella associated protein 276) - Rat Genome Database

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Gene: CFAP276 (cilia and flagella associated protein 276) Pan paniscus
Analyze
Symbol: CFAP276
Name: cilia and flagella associated protein 276
RGD ID: 11937278
Description: ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease intermediate type (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C1H1orf194; chromosome 1 C1orf194 homolog; chromosome 1 open reading frame, human C1orf194; cilia- and flagella-associated protein 276; uncharacterized protein C1orf194 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,190,311 - 118,198,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,350,365 - 117,358,304 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,482,675 - 111,490,533 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,646,686 - 110,653,493 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,643,859 - 110,654,249 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
CFAP276
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,190,311 - 118,198,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,350,365 - 117,358,304 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,482,675 - 111,490,533 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,646,686 - 110,653,493 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,643,859 - 110,654,249 (-)Ensemblpanpan1.1panPan2
CFAP276
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,105,951 - 109,113,831 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,105,951 - 109,113,857 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,648,573 - 109,656,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,450,096 - 109,458,002 (-)NCBINCBI36Build 36hg18NCBI36
Celera1107,917,953 - 107,925,883 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,541,791 - 107,549,831 (-)NCBIHuRef
CHM1_11109,763,238 - 109,771,144 (-)NCBICHM1_1
T2T-CHM13v2.01109,138,817 - 109,146,691 (-)NCBIT2T-CHM13v2.0
Cfap276
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,444,900 - 108,452,013 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,441,466 - 108,452,039 (+)EnsemblGRCm39 Ensembl
GRCm383108,537,584 - 108,544,697 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,534,150 - 108,544,723 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,340,502 - 108,347,615 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,665,597 - 108,672,780 (+)NCBIMGSCv36mm8
Celera3110,872,474 - 110,879,587 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.27NCBI
Cfap276
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,854,129 - 198,871,406 (+)NCBIGRCr8
mRatBN7.22196,166,009 - 196,177,919 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,166,009 - 196,177,919 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,810,000 - 203,821,856 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,692,065 - 201,703,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,509,035 - 196,520,891 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,320,420 - 211,332,327 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,320,420 - 211,332,327 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,789,966 - 230,802,122 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,097,423 - 204,109,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12204,065,600 - 204,070,687 (+)NCBI
Celera2188,811,912 - 188,823,816 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cfap276
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,523,992 - 12,531,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,522,502 - 12,530,699 (-)NCBIChiLan1.0ChiLan1.0
CFAP276
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,681,303 - 42,692,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,682,004 - 42,692,341 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,456,011 - 45,466,812 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,012,721 - 43,023,525 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,012,580 - 43,023,792 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,743,942 - 42,754,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,701,988 - 42,712,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,137,320 - 43,147,888 (+)NCBIUU_Cfam_GSD_1.0
Cfap276
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,460,966 - 19,467,878 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704645,833 - 652,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704646,056 - 652,433 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP276
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,955,163 - 110,961,962 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,954,190 - 110,962,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,448,652 - 121,456,362 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP276
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,430,428 - 24,437,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,430,867 - 24,439,082 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,015,730 - 34,022,494 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap276
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,867,483 - 4,872,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,866,226 - 4,872,781 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000031293   ⟹   ENSPPAP00000008656
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1110,643,859 - 110,654,249 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000031294   ⟹   ENSPPAP00000008657
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1110,646,763 - 110,653,416 (-)Ensembl
RefSeq Acc Id: XM_003808344   ⟹   XP_003808392
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21118,191,354 - 118,198,239 (+)NCBI
NHGRI_mPanPan11117,351,424 - 117,358,304 (+)NCBI
Mhudiblu_PPA_v01111,482,675 - 111,489,933 (-)NCBI
PanPan1.11110,646,686 - 110,653,493 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932749   ⟹   XP_034788640
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21118,190,311 - 118,198,239 (+)NCBI
NHGRI_mPanPan11117,350,365 - 117,358,304 (+)NCBI
Mhudiblu_PPA_v01111,482,675 - 111,490,533 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003808392 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788640 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008656
  ENSPPAP00000008656.1
  ENSPPAP00000008657.1
Reference Protein Sequences
RefSeq Acc Id: XP_003808392   ⟸   XM_003808344
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZVR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788640   ⟸   XM_034932749
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000008657   ⟸   ENSPPAT00000031294
RefSeq Acc Id: ENSPPAP00000008656   ⟸   ENSPPAT00000031293


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027575 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031293.1 UniProtKB/TrEMBL
  ENSPPAT00000031294.1 UniProtKB/TrEMBL
InterPro DUF3695 UniProtKB/TrEMBL
KEGG Report pps:100970491 UniProtKB/TrEMBL
NCBI Gene C1H1orf194 ENTREZGENE
Pfam DUF3695 UniProtKB/TrEMBL
UniProt A0A2R8ZVR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZXZ9_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-09-14 CFAP276  cilia and flagella associated protein 276  C1H1orf194  chromosome 1 C1orf194 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C1H1orf194  chromosome 1 C1orf194 homolog    chromosome 1 open reading frame, human C1orf194  Symbol and/or name change 5135510 APPROVED