LOC100980340 (protoheme IX farnesyltransferase, mitochondrial) - Rat Genome Database

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Gene: LOC100980340 (protoheme IX farnesyltransferase, mitochondrial) Pan paniscus
Analyze
Symbol: LOC100980340
Name: protoheme IX farnesyltransferase, mitochondrial
RGD ID: 11936438
Description: ENCODES a protein that exhibits farnesyltranstransferase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); cytochrome complex assembly (ortholog); heme A biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; hereditary coproporphyria pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Charcot-Marie-Tooth disease type 1A (ortholog); FOUND IN cytochrome complex (ortholog); cytosol (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100987588
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11742,089,989 - 42,274,872 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1742,091,452 - 42,274,762 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01737,443,319 - 37,582,436 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100980340
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11742,089,989 - 42,274,872 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1742,091,452 - 42,274,762 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01737,443,319 - 37,582,436 (-)NCBIMhudiblu_PPA_v0panPan3
COX10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1714,069,490 - 14,231,736 (+)EnsemblGRCh38hg38GRCh38
GRCh381714,069,504 - 14,208,677 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371713,972,821 - 14,111,994 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361713,913,444 - 14,052,719 (+)NCBINCBI36hg18NCBI36
Build 341713,913,443 - 14,052,717NCBI
Celera1713,998,545 - 14,137,802 (+)NCBI
Cytogenetic Map17p12NCBI
HuRef1713,868,124 - 14,007,418 (+)NCBIHuRef
CHM1_11713,981,510 - 14,120,811 (+)NCBICHM1_1
Cox10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,853,453 - 63,970,298 (-)NCBIGRCm39mm39
GRCm39 Ensembl1163,853,453 - 63,970,294 (-)Ensembl
GRCm381163,962,627 - 64,079,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,962,627 - 64,079,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv371163,776,129 - 63,892,974 (-)NCBIGRCm37mm9NCBIm37
MGSCv361163,780,063 - 63,895,609 (-)NCBImm8
Celera1170,900,073 - 71,017,265 (-)NCBICelera
Cytogenetic Map11B3NCBI
Cox10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21048,630,993 - 48,742,835 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1048,630,676 - 48,746,667 (-)Ensembl
Rnor_6.01050,439,778 - 50,563,920 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1050,439,782 - 50,574,539 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01050,207,540 - 50,331,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41050,191,370 - 50,230,838 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1047,863,873 - 47,975,130 (-)NCBICelera
Cytogenetic Map10q23NCBI
LOC102022268
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554673,292,018 - 3,415,778 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554673,294,200 - 3,415,778 (-)NCBIChiLan1.0ChiLan1.0
COX10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1537,853,495 - 37,982,228 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl537,852,875 - 37,982,243 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha538,001,945 - 38,128,093 (+)NCBI
ROS_Cfam_1.0537,962,402 - 38,090,211 (+)NCBI
UMICH_Zoey_3.1537,939,923 - 38,067,239 (+)NCBI
UNSW_CanFamBas_1.0537,883,236 - 38,009,345 (+)NCBI
UU_Cfam_GSD_1.0538,072,091 - 38,199,459 (+)NCBI
LOC101967907
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560256,813,655 - 56,935,692 (+)NCBI
SpeTri2.0NW_004936724783,591 - 905,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1258,011,831 - 58,117,700 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11258,011,831 - 58,110,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21260,937,041 - 60,944,770 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21261,048,730 - 61,076,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COX10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11613,410,654 - 13,550,922 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1613,410,792 - 13,551,903 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660597,683,104 - 7,823,932 (-)NCBIVero_WHO_p1.0
LOC101726271
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248772,161,819 - 2,282,336 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024926171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000025730   ⟹   ENSPPAP00000005710
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1742,091,452 - 42,274,762 (-)Ensembl
RefSeq Acc Id: XM_024926171   ⟹   XP_024781939
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11742,089,989 - 42,274,872 (-)NCBI
Mhudiblu_PPA_v01737,443,319 - 37,582,436 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024781939 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_024781939   ⟸   XM_024926171
- Sequence:
RefSeq Acc Id: ENSPPAP00000005710   ⟸   ENSPPAT00000025730


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000023390 Ensembl, ENTREZGENE
NCBI Gene LOC100980340 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LOC100980340  protoheme IX farnesyltransferase, mitochondrial  LOC100987588  protoheme IX farnesyltransferase, mitochondrial  Data Merged 737654 PROVISIONAL