ATP6V1B1 (ATPase H+ transporting V1 subunit B1) - Rat Genome Database
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Gene: ATP6V1B1 (ATPase H+ transporting V1 subunit B1) Pan paniscus
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Symbol: ATP6V1B1
Name: ATPase H+ transporting V1 subunit B1
RGD ID: 11936342
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); ATP metabolic process (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis 2 with Progressive Nerve Deafness (ortholog); genetic disease (ortholog); nephrocalcinosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: V-type proton ATPase subunit B, kidney isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,113,863 - 72,143,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,113,859 - 72,143,612 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A71,000,096 - 71,030,306 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ATP6V1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,113,863 - 72,143,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,113,859 - 72,143,612 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A71,000,096 - 71,030,306 (+)NCBIMhudiblu_PPA_v0panPan3
ATP6V1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl270,935,900 - 70,965,431 (+)EnsemblGRCh38hg38GRCh38
GRCh38270,935,900 - 70,965,431 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37271,163,030 - 71,192,561 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,016,506 - 71,046,069 (+)NCBINCBI36hg18NCBI36
Build 34271,074,674 - 71,104,207NCBI
Celera271,013,684 - 71,043,243 (+)NCBI
Cytogenetic Map2p13.3NCBI
HuRef270,899,497 - 70,928,997 (+)NCBIHuRef
CHM1_1271,092,347 - 71,121,872 (+)NCBICHM1_1
Atp6v1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,719,999 - 83,735,837 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,719,972 - 83,735,837 (+)Ensembl
GRCm38683,743,017 - 83,758,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,742,990 - 83,758,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,693,011 - 83,708,804 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,708,675 - 83,724,468 (+)NCBImm8
Celera685,725,645 - 85,742,032 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Atp6v1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,223,799 - 116,242,475 (+)NCBI
Rnor_6.0 Ensembl4115,416,580 - 115,437,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04115,417,100 - 115,435,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04180,004,952 - 180,024,878 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,931,972 - 117,950,626 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,176,425 - 118,194,509 (+)NCBI
Celera4105,216,251 - 105,234,921 (+)NCBICelera
Cytogenetic Map4q34NCBI
Atp6v1b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,256,096 - 14,282,410 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,256,096 - 14,281,572 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1069,252,926 - 69,287,542 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11069,261,311 - 69,287,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Atp6v1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649115,112,422 - 15,138,716 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,560,738 - 71,591,856 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,560,102 - 71,591,885 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,019,974 - 75,027,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1B1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,149,074 - 36,179,145 (-)NCBI
ChlSab1.1 Ensembl1436,149,006 - 36,177,671 (-)Ensembl
Atp6v1b1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247622,445,840 - 2,480,377 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000028947   ⟹   ENSPPAP00000006998
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A72,113,859 - 72,143,612 (+)Ensembl
RefSeq Acc Id: XM_003830953   ⟹   XP_003831001
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12A72,113,863 - 72,143,524 (+)NCBI
Mhudiblu_PPA_v02A71,000,096 - 71,030,306 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831001 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003831001   ⟸   XM_003830953
- Sequence:
RefSeq Acc Id: ENSPPAP00000006998   ⟸   ENSPPAT00000028947
Protein Domains
ATP-synt_ab   ATP-synt_ab_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000006998 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028947 UniProtKB/TrEMBL
InterPro ATPase_a/bsu_AS UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_nucl-bd UniProtKB/TrEMBL
  ATPase_V1-cplx_bsu UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  V-ATPase_su_B/beta UniProtKB/TrEMBL
KEGG Report pps:100976103 UniProtKB/TrEMBL
NCBI Gene ATP6V1B1 ENTREZGENE
PANTHER PTHR43389 UniProtKB/TrEMBL
Pfam ATP-synt_ab UniProtKB/TrEMBL
  ATP-synt_ab_N UniProtKB/TrEMBL
PIRSF V-ATPsynth_beta/V-ATPase_B UniProtKB/TrEMBL
PROSITE ATPASE_ALPHA_BETA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs V-ATPase_V1_B UniProtKB/TrEMBL
UniProt A0A2R8ZSZ1_PANPA UniProtKB/TrEMBL