LOC100988443 (zinc finger protein 823) - Rat Genome Database

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Gene: LOC100988443 (zinc finger protein 823) Pan paniscus
Analyze
Symbol: LOC100988443 (Ensembl: ZNF823)
Name: zinc finger protein 823
RGD ID: 11935535
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZNF823
RGD Orthologs
Human
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,635,918 - 16,653,785 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,628,520 - 15,653,154 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,268,763 - 11,286,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,978,214 - 11,995,986 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,978,214 - 11,995,986 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100988443
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,635,918 - 16,653,785 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,628,520 - 15,653,154 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,268,763 - 11,286,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,978,214 - 11,995,986 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,978,214 - 11,995,986 (-)Ensemblpanpan1.1panPan2
ZNF823
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,721,265 - 11,738,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,721,265 - 11,739,009 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,832,080 - 11,849,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,693,080 - 11,710,760 (-)NCBINCBI36Build 36hg18NCBI36
Celera1911,726,534 - 11,744,213 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,406,920 - 11,424,623 (-)NCBIHuRef
CHM1_11911,831,856 - 11,849,612 (-)NCBICHM1_1
T2T-CHM13v2.01911,849,432 - 11,867,152 (-)NCBIT2T-CHM13v2.0
LOC100517751
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1266,829,142 - 66,853,562 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2267,160,483 - 67,183,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF823
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,626,862 - 10,644,881 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660749,189,052 - 9,206,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047255   ⟹   ENSPPAP00000024429
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,978,214 - 11,995,986 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047259   ⟹   ENSPPAP00000024434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,978,214 - 11,982,550 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047262   ⟹   ENSPPAP00000024437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,980,218 - 11,995,789 (-)Ensembl
RefSeq Acc Id: XM_003830521   ⟹   XP_003830569
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22016,635,918 - 16,653,785 (-)NCBI
NHGRI_mPanPan11915,628,520 - 15,653,154 (-)NCBI
Mhudiblu_PPA_v01911,268,763 - 11,286,973 (-)NCBI
PanPan1.11911,978,214 - 11,995,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063599910   ⟹   XP_063455980
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22016,635,918 - 16,649,363 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003830569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455980 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024429
  ENSPPAP00000024429.1
  ENSPPAP00000024434.1
  ENSPPAP00000024437.1
Reference Protein Sequences
RefSeq Acc Id: XP_003830569   ⟸   XM_003830521
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BB48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000024429   ⟸   ENSPPAT00000047255
RefSeq Acc Id: ENSPPAP00000024434   ⟸   ENSPPAT00000047259
RefSeq Acc Id: ENSPPAP00000024437   ⟸   ENSPPAT00000047262
RefSeq Acc Id: XP_063455980   ⟸   XM_063599910
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035361 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047255.1 UniProtKB/TrEMBL
  ENSPPAT00000047259.1 UniProtKB/TrEMBL
  ENSPPAT00000047262.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100988443 UniProtKB/TrEMBL
NCBI Gene ZNF823 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 846 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9B4C0_PANPA UniProtKB/TrEMBL
  A0A2R9BB48 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BB51_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100988443  zinc finger protein 823  ZNF823  zinc finger protein 823  Symbol and/or name change 5135510 APPROVED