VSIG8 (V-set and immunoglobulin domain containing 8) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: VSIG8 (V-set and immunoglobulin domain containing 8) Pan paniscus
Analyze
Symbol: VSIG8
Name: V-set and immunoglobulin domain containing 8
RGD ID: 11934865
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: V-set and immunoglobulin domain-containing protein 8
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11139,126,959 - 139,134,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,126,959 - 139,135,206 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01135,185,990 - 135,221,407 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
VSIG8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11139,126,959 - 139,134,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,126,959 - 139,135,206 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01135,185,990 - 135,221,407 (-)NCBIMhudiblu_PPA_v0panPan3
VSIG8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1159,854,316 - 159,862,657 (-)EnsemblGRCh38hg38GRCh38
GRCh381159,854,316 - 159,862,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371159,824,106 - 159,832,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,090,730 - 158,099,071 (-)NCBINCBI36hg18NCBI36
Celera1132,892,533 - 132,900,874 (-)NCBI
Cytogenetic Map1q23.2NCBI
HuRef1131,180,790 - 131,189,134 (-)NCBIHuRef
CHM1_11161,219,446 - 161,227,779 (-)NCBICHM1_1
Vsig8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,383,505 - 172,391,284 (+)NCBIGRCm39mm39
GRCm381172,555,938 - 172,563,717 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,555,938 - 172,563,717 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,486,069 - 174,493,848 (+)NCBIGRCm37mm9NCBIm37
MGSCv361174,392,613 - 174,400,391 (+)NCBImm8
Celera1175,410,068 - 175,418,089 (+)NCBICelera
Cytogenetic Map1H3NCBI
Vsig8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21385,023,177 - 85,031,364 (+)NCBI
Rnor_6.0 Ensembl1390,943,255 - 90,951,443 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01390,943,255 - 90,951,443 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01395,462,572 - 95,470,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,561,388 - 88,569,578 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1384,632,209 - 84,640,242 (+)NCBICelera
Cytogenetic Map13q24NCBI
VSIG8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3822,278,807 - 22,285,444 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13822,278,668 - 22,285,444 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC101969069
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936740752,134 - 756,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VSIG8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,637,219 - 90,644,387 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,636,983 - 90,644,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,638,510 - 98,646,086 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VSIG8
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,091,971 - 4,096,947 (+)NCBI
ChlSab1.1 Ensembl204,088,450 - 4,096,212 (+)Ensembl
Vsig8
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247941,389,093 - 1,403,574 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052244   ⟹   ENSPPAP00000029395
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1139,126,959 - 139,135,206 (-)Ensembl
RefSeq Acc Id: XM_034938323   ⟹   XP_034794214
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01135,189,496 - 135,221,407 (-)NCBI
RefSeq Acc Id: XR_004666380
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01135,185,990 - 135,210,633 (-)NCBI
RefSeq Acc Id: XR_004666382
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01135,185,991 - 135,206,522 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034794214 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034794214   ⟸   XM_034938323
RefSeq Acc Id: ENSPPAP00000029395   ⟸   ENSPPAT00000052244
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000029395 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052244 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene VSIG8 ENTREZGENE
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9BIB0_PANPA UniProtKB/TrEMBL