IGF2BP1 (insulin like growth factor 2 mRNA binding protein 1) - Rat Genome Database

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Gene: IGF2BP1 (insulin like growth factor 2 mRNA binding protein 1) Pan paniscus
Analyze
Symbol: IGF2BP1
Name: insulin like growth factor 2 mRNA binding protein 1
RGD ID: 11932628
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN dendrite arborization (ortholog); neuronal stem cell population maintenance (ortholog); pallium cell proliferation in forebrain (ortholog); ASSOCIATED WITH colon adenoma (ortholog); Experimental Neoplasms (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); CRD-mediated mRNA stability complex (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: insulin-like growth factor 2 mRNA-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,042,863 - 16,101,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,008,913 - 18,067,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,479,806 - 8,538,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,461,552 - 8,519,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,468,240 - 8,519,552 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IGF2BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,042,863 - 16,101,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,008,913 - 18,067,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,479,806 - 8,538,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,461,552 - 8,519,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,468,240 - 8,519,552 (-)Ensemblpanpan1.1panPan2
IGF2BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,996,558 - 49,056,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,997,385 - 49,056,145 (+)EnsemblGRCh38hg38GRCh38
GRCh371747,074,747 - 47,133,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,429,773 - 44,488,506 (+)NCBINCBI36Build 36hg18NCBI36
Celera1743,529,020 - 43,588,502 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,441,949 - 42,500,581 (+)NCBIHuRef
CHM1_11747,140,077 - 47,198,718 (+)NCBICHM1_1
T2T-CHM13v2.01749,859,908 - 49,919,501 (+)NCBIT2T-CHM13v2.0
Igf2bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,847,989 - 95,896,770 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,847,989 - 95,896,766 (-)EnsemblGRCm39 Ensembl
GRCm381195,957,163 - 96,005,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,957,163 - 96,005,940 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,818,477 - 95,867,258 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,778,822 - 95,822,002 (-)NCBIMGSCv36mm8
Celera11105,607,858 - 105,656,580 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.08NCBI
Igf2bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,405,021 - 81,447,814 (-)NCBIGRCr8
mRatBN7.21080,908,300 - 80,951,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,908,076 - 80,951,129 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,857,301 - 85,899,408 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,355,335 - 85,397,441 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,747,478 - 80,789,863 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,774,178 - 83,823,323 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,780,203 - 83,822,996 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,579,028 - 83,628,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,671,084 - 84,714,648 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11084,685,453 - 84,729,018 (-)NCBI
Celera1079,676,729 - 79,719,122 (-)NCBICelera
Cytogenetic Map10q26NCBI
Igf2bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,312,715 - 12,348,663 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,312,715 - 12,348,663 (-)NCBIChiLan1.0ChiLan1.0
IGF2BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,199,287 - 25,240,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,198,805 - 25,240,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,660,181 - 24,703,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,994,308 - 26,036,588 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,993,861 - 26,034,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,762,182 - 24,805,339 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,020,613 - 25,063,780 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,149,583 - 25,192,753 (+)NCBIUU_Cfam_GSD_1.0
Igf2bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,605,834 - 24,645,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,430,008 - 12,469,083 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,430,343 - 12,468,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGF2BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,197,058 - 25,243,272 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,196,955 - 25,244,660 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,162,754 - 25,209,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IGF2BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,405,923 - 69,461,613 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,406,549 - 69,459,175 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,510,372 - 40,569,936 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igf2bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,353,005 - 5,385,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,352,932 - 5,391,617 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000057724   ⟹   ENSPPAP00000034839
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl178,468,240 - 8,519,552 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057730   ⟹   ENSPPAP00000034845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl178,468,240 - 8,519,018 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057732   ⟹   ENSPPAP00000034847
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl178,468,240 - 8,519,018 (-)Ensembl
RefSeq Acc Id: XM_008962402   ⟹   XP_008960650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21916,042,863 - 16,101,303 (-)NCBI
NHGRI_mPanPan11718,008,913 - 18,067,252 (-)NCBI
Mhudiblu_PPA_v0178,479,806 - 8,538,045 (-)NCBI
PanPan1.1178,461,552 - 8,519,550 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063598951   ⟹   XP_063455021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21916,042,863 - 16,101,302 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008960650 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455021 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034839.1
  ENSPPAP00000034845.1
  ENSPPAP00000034847.1
Reference Protein Sequences
RefSeq Acc Id: XP_008960650   ⟸   XM_008962402
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C228 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000034839   ⟸   ENSPPAT00000057724
RefSeq Acc Id: ENSPPAP00000034847   ⟸   ENSPPAT00000057732
RefSeq Acc Id: ENSPPAP00000034845   ⟸   ENSPPAT00000057730
RefSeq Acc Id: XP_063455021   ⟸   XM_063598951
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C8U3 (UniProtKB/TrEMBL)
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057724.1 UniProtKB/TrEMBL
  ENSPPAT00000057730.1 UniProtKB/TrEMBL
  ENSPPAT00000057732.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
  3.30.310.210 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro IGF2BP1_RRM1 UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report pps:100992598 UniProtKB/TrEMBL
NCBI Gene IGF2BP1 ENTREZGENE
PANTHER INSULIN-LIKE GROWTH FACTOR 2 MRNA-BINDING PROTEIN 1 UniProtKB/TrEMBL
  KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A2R9BYU8_PANPA UniProtKB/TrEMBL
  A0A2R9C228 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8U3 ENTREZGENE, UniProtKB/TrEMBL