GLCCI1 (glucocorticoid induced 1) - Rat Genome Database

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Gene: GLCCI1 (glucocorticoid induced 1) Pan paniscus
Analyze
Symbol: GLCCI1
Name: glucocorticoid induced 1
RGD ID: 11932345
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucocorticoid induced transcript 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1761,193,195 - 61,313,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v078,693,516 - 8,814,168 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.178,044,662 - 8,163,618 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GLCCI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1761,193,195 - 61,313,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v078,693,516 - 8,814,168 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.178,044,662 - 8,163,618 (+)NCBIpanpan1.1PanPan1.1panPan2
GLCCI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3877,968,796 - 8,089,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl77,968,796 - 8,094,272 (+)EnsemblGRCh38hg38GRCh38
GRCh3778,008,427 - 8,128,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3677,974,948 - 8,095,235 (+)NCBINCBI36Build 36hg18NCBI36
Build 3477,781,664 - 7,900,209NCBI
Celera77,976,156 - 8,096,458 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef77,858,183 - 7,978,546 (+)NCBIHuRef
CHM1_178,008,121 - 8,128,474 (+)NCBICHM1_1
T2T-CHM13v2.078,087,312 - 8,207,580 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v278,054,543 - 8,174,916 (+)NCBI
Glcci1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3968,509,600 - 8,597,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl68,509,600 - 8,597,548 (+)EnsemblGRCm39 Ensembl
GRCm3868,509,600 - 8,597,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl68,509,600 - 8,597,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv3768,459,596 - 8,547,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3668,209,451 - 8,547,480 (+)NCBIMGSCv36mm8
Celera68,641,891 - 8,740,021 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map64.38NCBI
Glcci1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8437,274,271 - 37,601,898 (+)NCBIGRCr8
mRatBN7.2436,307,956 - 36,635,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl436,307,903 - 36,635,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx441,275,536 - 41,601,232 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0437,201,737 - 37,527,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0435,613,032 - 35,939,900 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0434,282,625 - 34,612,709 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,282,625 - 34,614,438 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0434,142,803 - 34,470,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4433,307,545 - 33,478,219 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera431,811,535 - 32,136,116 (+)NCBICelera
Cytogenetic Map4q21NCBI
Glcci1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543215,026,500 - 15,112,551 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543215,060,239 - 15,112,545 (+)NCBIChiLan1.0ChiLan1.0
GLCCI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11423,555,864 - 23,657,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1423,267,136 - 23,654,725 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1423,131,823 - 23,232,119 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01423,371,275 - 23,471,855 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1423,371,348 - 23,471,849 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11423,523,214 - 23,623,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01423,262,350 - 23,362,568 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01423,514,213 - 23,614,530 (+)NCBIUU_Cfam_GSD_1.0
Glcci1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511836,901,546 - 36,987,428 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365851,875,144 - 1,960,345 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365851,875,858 - 1,960,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLCCI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl978,217,213 - 78,334,077 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1978,218,180 - 78,334,085 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2985,842,474 - 85,942,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLCCI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12150,121,781 - 50,243,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2150,124,311 - 50,241,380 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604254,150,118 - 54,275,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glcci1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248135,603,001 - 5,705,042 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_003825045   ⟹   XP_003825093
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBI
NHGRI_mPanPan1761,193,195 - 61,313,843 (+)NCBI
Mhudiblu_PPA_v078,693,516 - 8,814,168 (+)NCBI
PanPan1.178,044,662 - 8,163,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034963688   ⟹   XP_034819579
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBI
NHGRI_mPanPan1761,193,664 - 61,313,843 (+)NCBI
Mhudiblu_PPA_v078,693,934 - 8,814,168 (+)NCBI
RefSeq Acc Id: XM_034963690   ⟹   XP_034819581
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBI
NHGRI_mPanPan1761,193,664 - 61,311,740 (+)NCBI
Mhudiblu_PPA_v078,693,934 - 8,814,168 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003825093 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819579 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819581 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003825093   ⟸   XM_003825045
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034819579   ⟸   XM_034963688
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034819581   ⟸   XM_034963690
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene GLCCI1 ENTREZGENE