CMC1 (C-X9-C motif containing 1) - Rat Genome Database

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Gene: CMC1 (C-X9-C motif containing 1) Pan paniscus
Analyze
Symbol: CMC1
Name: C-X9-C motif containing 1
RGD ID: 11926657
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COX assembly mitochondrial protein 1 homolog; COX assembly mitochondrial protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2228,190,667 - 28,268,681 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1328,195,437 - 28,273,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0328,131,842 - 28,209,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1328,453,576 - 28,531,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl328,453,577 - 28,531,466 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2228,190,667 - 28,268,681 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1328,195,437 - 28,273,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0328,131,842 - 28,209,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1328,453,576 - 28,531,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl328,453,577 - 28,531,466 (+)Ensemblpanpan1.1panPan2
CMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38328,241,619 - 28,325,142 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl328,241,584 - 28,325,142 (+)EnsemblGRCh38hg38GRCh38
GRCh37328,283,110 - 28,366,633 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36328,258,128 - 28,336,268 (+)NCBINCBI36Build 36hg18NCBI36
Celera328,219,569 - 28,297,727 (+)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef328,224,810 - 28,302,932 (+)NCBIHuRef
CHM1_1328,233,141 - 28,311,277 (+)NCBICHM1_1
T2T-CHM13v2.0328,243,678 - 28,327,207 (+)NCBIT2T-CHM13v2.0
Cmc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399117,893,051 - 117,979,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9117,893,590 - 117,979,245 (-)EnsemblGRCm39 Ensembl
GRCm389118,063,983 - 118,150,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,064,522 - 118,150,177 (-)EnsemblGRCm38mm10GRCm38
MGSCv379117,974,213 - 118,059,198 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369117,913,793 - 117,998,778 (-)NCBIMGSCv36mm8
Celera9118,539,515 - 118,622,656 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map969.87NCBI
Cmc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88126,677,560 - 126,778,403 (-)NCBIGRCr8
mRatBN7.28117,798,036 - 117,900,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8117,798,945 - 117,900,462 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8123,400,235 - 123,457,986 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08121,599,136 - 121,656,888 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08119,430,373 - 119,488,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08126,437,345 - 126,495,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8126,437,345 - 126,495,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08125,679,760 - 125,780,472 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48122,994,958 - 123,046,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,008,107 - 123,066,107 (-)NCBI
Celera8116,988,495 - 117,046,504 (-)NCBICelera
Cytogenetic Map8q32NCBI
Cmc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543019,729,487 - 19,799,422 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543019,567,377 - 19,799,422 (+)NCBIChiLan1.0ChiLan1.0
CMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12315,949,422 - 16,034,125 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2315,913,487 - 16,034,782 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2315,944,247 - 16,043,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02316,245,170 - 16,344,204 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12316,070,235 - 16,216,259 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02316,183,685 - 16,282,426 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02316,247,673 - 16,346,868 (-)NCBIUU_Cfam_GSD_1.0
Cmc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118186,102,163 - 186,167,345 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647319,240,755 - 19,305,918 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647319,240,708 - 19,305,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1314,682,233 - 14,759,891 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11314,682,224 - 14,757,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21316,316,614 - 16,454,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11572,777,795 - 72,856,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604145,971,569 - 46,065,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247886,111,967 - 6,182,624 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247886,111,772 - 6,182,775 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000059239   ⟹   ENSPPAP00000036347
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl328,453,577 - 28,531,466 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059247   ⟹   ENSPPAP00000036355
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl328,453,769 - 28,531,322 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059250   ⟹   ENSPPAP00000036358
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl328,472,784 - 28,531,322 (+)Ensembl
RefSeq Acc Id: XM_003826148   ⟹   XP_003826196
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2228,190,668 - 28,268,681 (+)NCBI
NHGRI_mPanPan1328,195,475 - 28,273,449 (+)NCBI
Mhudiblu_PPA_v0328,131,878 - 28,209,840 (+)NCBI
PanPan1.1328,453,577 - 28,531,466 (+)NCBI
Sequence:
RefSeq Acc Id: XM_057301635   ⟹   XP_057157618
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2228,190,667 - 28,268,681 (+)NCBI
NHGRI_mPanPan1328,195,533 - 28,273,449 (+)NCBI
RefSeq Acc Id: XM_057301636   ⟹   XP_057157619
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2228,190,667 - 28,268,681 (+)NCBI
NHGRI_mPanPan1328,195,478 - 28,273,449 (+)NCBI
RefSeq Acc Id: XM_063602226   ⟹   XP_063458296
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2228,202,842 - 28,268,681 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003826196   ⟸   XM_003826148
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CDE2 (UniProtKB/TrEMBL),   A0A2R9C636 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000036347   ⟸   ENSPPAT00000059239
RefSeq Acc Id: ENSPPAP00000036355   ⟸   ENSPPAT00000059247
RefSeq Acc Id: ENSPPAP00000036358   ⟸   ENSPPAT00000059250
RefSeq Acc Id: XP_057157619   ⟸   XM_057301636
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C320 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157618   ⟸   XM_057301635
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063458296   ⟸   XM_063602226
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040947 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059239.1 UniProtKB/TrEMBL
  ENSPPAT00000059247.1 UniProtKB/TrEMBL
  ENSPPAT00000059250.1 UniProtKB/TrEMBL
InterPro Cyt_c_biogenesis_Cmc1-like UniProtKB/TrEMBL
KEGG Report pps:100988179 UniProtKB/TrEMBL
NCBI Gene CMC1 ENTREZGENE
PANTHER COX ASSEMBLY MITOCHONDRIAL PROTEIN HOMOLOG UniProtKB/TrEMBL
  PTHR22977 UniProtKB/TrEMBL
Pfam Cmc1 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
UniProt A0A2R9C320 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C636 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CDE2 ENTREZGENE, UniProtKB/TrEMBL