SEPTIN5 (septin 5) - Rat Genome Database

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Gene: SEPTIN5 (septin 5) Pan paniscus
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Symbol: SEPTIN5
Name: septin 5
RGD ID: 11926137
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); identical protein binding (inferred); INVOLVED IN cytoskeleton-dependent cytokinesis (inferred); regulation of exocytosis (inferred); ASSOCIATED WITH autistic disorder (ortholog); Bernard-Soulier syndrome (ortholog); Bernard-Soulier Syndrome, Type B (ortholog); FOUND IN cell division site (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEPT5; septin-5
RGD Orthologs
Human
Rat
Chinchilla
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,342,070 - 29,350,894 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,889,813 - 31,898,621 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,476,400 - 2,485,225 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12218,150,865 - 18,159,697 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,150,865 - 18,159,697 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEPTIN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,342,070 - 29,350,894 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,889,813 - 31,898,621 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,476,400 - 2,485,225 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12218,150,865 - 18,159,697 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,150,865 - 18,159,697 (+)Ensemblpanpan1.1panPan2
SEPTIN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,717,220 - 19,724,774 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,714,503 - 19,724,224 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,717,220 - 19,724,772 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,704,743 - 19,712,297 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,081,987 - 18,092,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 342218,076,540 - 18,085,396NCBI
Celera223,554,100 - 3,564,410 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,324,728 - 3,332,283 (+)NCBIHuRef
CHM1_12219,704,307 - 19,711,861 (+)NCBICHM1_1
T2T-CHM13v2.02220,094,011 - 20,101,565 (+)NCBIT2T-CHM13v2.0
Wfdc21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,125,336 - 69,131,205 (+)NCBIGRCr8
mRatBN7.21068,627,836 - 68,633,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,627,820 - 68,633,701 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,247,850 - 73,253,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,752,861 - 72,758,724 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,217,285 - 68,223,148 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,047,326 - 71,053,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,047,310 - 71,053,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,671,087 - 70,676,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,969,946 - 71,975,815 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11071,984,299 - 71,990,181 (+)NCBI
Celera1067,560,815 - 67,566,674 (+)NCBICelera
Cytogenetic Map10q26NCBI
Septin5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,359,609 - 18,369,648 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,361,072 - 18,369,648 (-)NCBIChiLan1.0ChiLan1.0
Septin5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,126,300 - 139,135,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,618,597 - 3,630,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,619,008 - 3,627,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,022,074 - 6,030,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,020,917 - 6,030,821 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085895,974 - 904,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747343,934 - 353,561 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747343,940 - 352,016 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000062563   ⟹   ENSPPAP00000039652
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2218,150,865 - 18,159,697 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062572   ⟹   ENSPPAP00000039661
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2218,150,963 - 18,158,862 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062573   ⟹   ENSPPAP00000039662
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2218,150,963 - 18,158,229 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062575   ⟹   ENSPPAP00000039664
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2218,154,805 - 18,159,697 (+)Ensembl
RefSeq Acc Id: XM_008966657   ⟹   XP_008964905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22329,346,254 - 29,350,894 (+)NCBI
NHGRI_mPanPan12231,893,583 - 31,898,621 (+)NCBI
Mhudiblu_PPA_v0222,480,381 - 2,485,225 (+)NCBI
PanPan1.12218,154,805 - 18,159,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008966658   ⟹   XP_008964906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22329,342,070 - 29,350,894 (+)NCBI
NHGRI_mPanPan12231,889,813 - 31,898,621 (+)NCBI
Mhudiblu_PPA_v0222,476,400 - 2,485,225 (+)NCBI
PanPan1.12218,150,865 - 18,159,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008966659   ⟹   XP_008964907
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22329,346,254 - 29,349,886 (+)NCBI
NHGRI_mPanPan12231,893,718 - 31,897,614 (+)NCBI
Mhudiblu_PPA_v0222,480,371 - 2,484,218 (+)NCBI
PanPan1.12218,154,805 - 18,158,689 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008964906   ⟸   XM_008966658
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CN69 (UniProtKB/TrEMBL),   A0A2R9CCK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964905   ⟸   XM_008966657
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCR4 (UniProtKB/TrEMBL),   A0A2R9CCK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964907   ⟸   XM_008966659
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSPPAP00000039652   ⟸   ENSPPAT00000062563
RefSeq Acc Id: ENSPPAP00000039664   ⟸   ENSPPAT00000062575
RefSeq Acc Id: ENSPPAP00000039662   ⟸   ENSPPAT00000062573
RefSeq Acc Id: ENSPPAP00000039661   ⟸   ENSPPAT00000062572
Protein Domains
Septin-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042516 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062563.1 UniProtKB/TrEMBL
  ENSPPAT00000062572.1 UniProtKB/TrEMBL
  ENSPPAT00000062573.1 UniProtKB/TrEMBL
  ENSPPAT00000062575.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
NCBI Gene SEPT5 ENTREZGENE
PANTHER PTHR18884:SF68 UniProtKB/TrEMBL
  SEPTIN UniProtKB/TrEMBL
Pfam Septin UniProtKB/TrEMBL
PIRSF Septin UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9CCK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CCR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CN69 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CN75_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 SEPTIN5  septin 5  SEPT5    Symbol and/or name change 5135510 APPROVED