LRRC72 (leucine rich repeat containing 72)

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Gene: LRRC72 (leucine rich repeat containing 72) Pan paniscus

Analyze

Symbol:

LRRC72

Name:

leucine rich repeat containing 72

RGD ID:

11925298

Description:

ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy A7 (ortholog); pleomorphic xanthoastrocytoma (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

leucine-rich repeat-containing protein 72

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	16,507,468 - 16,563,220 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	16,507,468 - 16,564,320 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	17,180,011 - 17,238,810 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital muscular dystrophy-dystroglycanopathy A7 (ISO)

pleomorphic xanthoastrocytoma (ISO)

References

Genomics

Comparative Map Data

LRRC72
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	16,507,468 - 16,563,220 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	16,507,468 - 16,564,320 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	17,180,011 - 17,238,810 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LRRC72
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	16,526,825 - 16,581,568 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	16,526,825 - 16,581,568 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	16,566,450 - 16,621,193 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	7	16,546,301 - 16,600,867 (+)	NCBI
Cytogenetic Map	7	p21.1	NCBI
HuRef	7	16,453,033 - 16,507,799 (+)	NCBI		HuRef
CHM1_1	7	16,566,267 - 16,620,873 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	16,619,635 - 16,674,253 (+)	NCBI

Lrrc72
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	36,258,328 - 36,306,395 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	12	36,258,344 - 36,303,397 (-)	Ensembl
GRCm38	12	36,208,329 - 36,256,396 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	36,208,345 - 36,253,398 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	36,934,932 - 36,979,985 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	36,718,611 - 36,728,468 (-)	NCBI			mm8
Celera	12	37,658,688 - 37,703,782 (-)	NCBI		Celera
Cytogenetic Map	12	A3	NCBI

Lrrc72
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	52,935,387 - 52,995,552 (-)	NCBI
Rnor_6.0 Ensembl	6	55,694,470 - 55,711,146 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	55,694,269 - 55,757,234 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	65,308,461 - 65,368,142 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	54,929,069 - 55,004,458 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	6	52,077,685 - 52,138,062 (-)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

Lrrc72
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955410	19,714,223 - 19,774,630 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC72
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	14	31,079,220 - 31,112,982 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	14	31,079,128 - 31,112,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Lrrc72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936546	3,067,206 - 3,120,300 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC72
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	85,803,124 - 85,844,803 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	85,811,382 - 85,844,726 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LRRC72
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	41,535,353 - 41,584,785 (-)	NCBI
ChlSab1.1 Ensembl	21	41,535,423 - 41,584,284 (-)	Ensembl

Lrrc72
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	13,617,233 - 13,715,897 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003825012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000044154 ⟹ ENSPPAP00000021352

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	16,507,468 - 16,564,320 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000044156 ⟹ ENSPPAP00000021354

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	16,507,555 - 16,513,294 (+)	Ensembl

RefSeq Acc Id:

XM_003825012 ⟹ XP_003825060

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	7	16,507,468 - 16,563,220 (+)	NCBI
Mhudiblu_PPA_v0	7	17,180,011 - 17,238,810 (+)	NCBI

Sequence:

show sequence

GCTGCGCACCAAGCCAAGTCTCTCTTTGGTGCCACCGACGGGCGAGGCCGGATTAATCACCGCT
GCTTCGGCCGCCCATGTGCCCTGATGTCCTGGGACCCGAACCCCGTGCCCCGTACCTTGCGATG
CTGGCGCCTACGGAGGGCATCCGAAACTGCCCTACAGAGCAGTCGCCGGGCAGTTGAAGATCAG
CTAAAGATATGTGGCCACAAGAGGGATGCTGATGTCTTTGAGCTGTTCCTTTCTAAAAAGGAAC
TGACAGAGGTCGTTGATCTTTCTAGGTTTAAAAAATTAAAATACTTATGGCTTCATCATAACAA
GCTCCATGGAATAACATTTCTAACTAGAAACTATTGTCTGACAGAACTATATCTAAACAACAAT
GCAATATTTGAGATAGAAGGCCTGCATTATTTGCCTTCATTGCATATACTCCTGCTACACCACA
ATGAGCTAACCAACATTGATGCAACAGTGAAGGAATTAAAGGGAATGCTAAATCTGAAGATCCT
AAGTCTATACCAAAATCCTTTGTGCCAATATAACCTGTATCGTTTATATATCATCTACCACCTT
CCAGGAGTGGAGCTGCTTGACCGAAATCAAGTTACAGAAAAAGAAAGAAGATCAATGATTACCA
TTTTTAACCATAAAAAGGCTCATATCGTTCAATCAATAGCATTCGGAGGAAAAGTGGATGCTTC
ATGGGATCCCAAATCACCATTTAAGCAAAAACCTGCCCAGAGAGTACCTTCAGATTTTGCATTT
GCAAATAATGTAGACAAAACTGTTCTTGATGACCCAGAAGATGCTGTTTTTGTGAGGTCCATGA
AGAGATCAGTGATGACTTTGACCTCTATGAACTGGGACACAGTTCCAACACGAGAGGAAAGGTA
CCTTGAAGAGGAAGGCACAGAACCAGCTCAAATGCTCACAGTTACACTGAGATAAGCCCTGGTA
TTTCTAGATATCTTAGTGGTTTTCAGTTGTATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003825060	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_003825060 ⟸ XM_003825012

- Sequence:

show sequence

MSWDPNPVPRTLRCWRLRRASETALQSSRRAVEDQLKICGHKRDADVFELFLSKKELTEVVDLS
RFKKLKYLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEIEGLHYLPSLHILLLHHNELTNIDA
TVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERRSMITIFNHKKAH
IVQSIAFGGKVDASWDPKSPFKQKPAQRVPSDFAFANNVDKTVLDDPEDAVFVRSMKRSVMTLT
SMNWDTVPTREERYLEEEGTEPAQMLTVTLR

hide sequence

RefSeq Acc Id:

ENSPPAP00000021352 ⟸ ENSPPAT00000044154

RefSeq Acc Id:

ENSPPAP00000021354 ⟸ ENSPPAT00000044156

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000033885	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000021352	ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAP00000021354	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000044154	UniProtKB/TrEMBL
	ENSPPAT00000044156	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	LRC72	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100990993	UniProtKB/TrEMBL
NCBI Gene	LRRC72	ENTREZGENE
PANTHER	PTHR46759	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
UniProt	A0A2R9AVM0_PANPA	UniProtKB/TrEMBL
	A0A2R9B1Q8_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar