LRRC72 (leucine rich repeat containing 72) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: LRRC72 (leucine rich repeat containing 72) Pan paniscus
Analyze
Symbol: LRRC72
Name: leucine rich repeat containing 72
RGD ID: 11925298
Description: ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy A7 (ortholog); pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leucine-rich repeat-containing protein 72
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1716,507,468 - 16,563,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,507,468 - 16,564,320 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0717,180,011 - 17,238,810 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LRRC72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1716,507,468 - 16,563,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,507,468 - 16,564,320 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0717,180,011 - 17,238,810 (+)NCBIMhudiblu_PPA_v0panPan3
LRRC72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl716,526,825 - 16,581,568 (+)EnsemblGRCh38hg38GRCh38
GRCh38716,526,825 - 16,581,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37716,566,450 - 16,621,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera716,546,301 - 16,600,867 (+)NCBI
Cytogenetic Map7p21.1NCBI
HuRef716,453,033 - 16,507,799 (+)NCBIHuRef
CHM1_1716,566,267 - 16,620,873 (+)NCBICHM1_1
CRA_TCAGchr7v2716,619,635 - 16,674,253 (+)NCBI
Lrrc72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,258,328 - 36,306,395 (-)NCBIGRCm39mm39
GRCm39 Ensembl1236,258,344 - 36,303,397 (-)Ensembl
GRCm381236,208,329 - 36,256,396 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,208,345 - 36,253,398 (-)EnsemblGRCm38mm10GRCm38
MGSCv371236,934,932 - 36,979,985 (-)NCBIGRCm37mm9NCBIm37
MGSCv361236,718,611 - 36,728,468 (-)NCBImm8
Celera1237,658,688 - 37,703,782 (-)NCBICelera
Cytogenetic Map12A3NCBI
Lrrc72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2652,935,387 - 52,995,552 (-)NCBI
Rnor_6.0 Ensembl655,694,470 - 55,711,146 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0655,694,269 - 55,757,234 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0665,308,461 - 65,368,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4654,929,069 - 55,004,458 (-)NCBIRGSC3.4rn4RGSC3.4
Celera652,077,685 - 52,138,062 (-)NCBICelera
Cytogenetic Map6q16NCBI
Lrrc72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541019,714,223 - 19,774,630 (+)NCBIChiLan1.0ChiLan1.0
LRRC72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1431,079,220 - 31,112,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11431,079,128 - 31,112,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Lrrc72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365463,067,206 - 3,120,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,803,124 - 85,844,803 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,811,382 - 85,844,726 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LRRC72
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,535,353 - 41,584,785 (-)NCBI
ChlSab1.1 Ensembl2141,535,423 - 41,584,284 (-)Ensembl
Lrrc72
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473913,617,233 - 13,715,897 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000044154   ⟹   ENSPPAP00000021352
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl716,507,468 - 16,564,320 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000044156   ⟹   ENSPPAP00000021354
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl716,507,555 - 16,513,294 (+)Ensembl
RefSeq Acc Id: XM_003825012   ⟹   XP_003825060
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1716,507,468 - 16,563,220 (+)NCBI
Mhudiblu_PPA_v0717,180,011 - 17,238,810 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003825060 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003825060   ⟸   XM_003825012
- Sequence:
RefSeq Acc Id: ENSPPAP00000021352   ⟸   ENSPPAT00000044154
RefSeq Acc Id: ENSPPAP00000021354   ⟸   ENSPPAT00000044156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000021352 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000021354 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044154 UniProtKB/TrEMBL
  ENSPPAT00000044156 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRC72 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100990993 UniProtKB/TrEMBL
NCBI Gene LRRC72 ENTREZGENE
PANTHER PTHR46759 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
UniProt A0A2R9AVM0_PANPA UniProtKB/TrEMBL
  A0A2R9B1Q8_PANPA UniProtKB/TrEMBL