SLC16A1 (solute carrier family 16 member 1) - Rat Genome Database
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Gene: SLC16A1 (solute carrier family 16 member 1) Pan paniscus
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Symbol: SLC16A1
Name: solute carrier family 16 member 1
RGD ID: 11924490
Description: ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); INVOLVED IN behavioral response to nutrient (ortholog); carboxylic acid transmembrane transport (ortholog); cellular response to organic cyclic compound (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Colonic Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: monocarboxylate transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11124,755,250 - 124,800,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC16A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11124,755,250 - 124,800,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBIMhudiblu_PPA_v0panPan3
SLC16A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1112,911,847 - 112,957,593 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1112,911,847 - 112,957,013 (-)EnsemblGRCh38hg38GRCh38
GRCh381112,911,847 - 112,956,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371113,454,469 - 113,498,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,255,992 - 113,300,498 (-)NCBINCBI36hg18NCBI36
Build 341113,166,895 - 113,210,847NCBI
Celera1111,683,316 - 111,727,817 (-)NCBI
Cytogenetic Map1p13.2NCBI
HuRef1111,313,328 - 111,357,846 (-)NCBIHuRef
CHM1_11113,569,526 - 113,614,046 (-)NCBICHM1_1
Slc16a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,545,980 - 104,565,778 (+)NCBIGRCm39mm39
GRCm39 Ensembl3104,545,984 - 104,565,778 (+)Ensembl
GRCm383104,638,664 - 104,658,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,638,668 - 104,658,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,442,591 - 104,462,385 (+)NCBIGRCm37mm9NCBIm37
MGSCv363104,767,729 - 104,787,523 (+)NCBImm8
Celera3106,835,859 - 106,855,656 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Slc16a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22192,123,755 - 192,144,617 (+)NCBI
Rnor_6.0 Ensembl2207,108,552 - 207,128,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02207,108,552 - 207,129,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02226,529,294 - 226,549,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,860,341 - 199,879,856 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12199,823,090 - 199,843,400 (+)NCBI
Celera2184,591,461 - 184,610,976 (+)NCBICelera
Cytogenetic Map2q34NCBI
Slc16a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBIChiLan1.0ChiLan1.0
SLC16A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1762,622,902 - 62,787,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11762,636,600 - 62,690,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc16a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,494,463 - 107,641,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,510,920 - 107,547,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,603,634 - 117,614,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,694,222 - 20,741,542 (+)NCBI
ChlSab1.1 Ensembl2020,727,199 - 20,739,979 (+)Ensembl


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000038519   ⟹   ENSPPAP00000015826
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensembl
RefSeq Acc Id: XM_003810706   ⟹   XP_003810754
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11124,755,250 - 124,800,032 (+)NCBI
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810754 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003810754   ⟸   XM_003810706
- Sequence:
RefSeq Acc Id: ENSPPAP00000015826   ⟸   ENSPPAT00000038519
Protein Domains
MFS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031036 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000015826 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038519 UniProtKB/TrEMBL
InterPro MCT UniProtKB/TrEMBL
  MCT1 UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report pps:100987984 UniProtKB/TrEMBL
NCBI Gene SLC16A1 ENTREZGENE
PANTHER PTHR11360:SF24 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
TIGRFAMs 2A0113 UniProtKB/TrEMBL
UniProt A0A2R9AET5_PANPA UniProtKB/TrEMBL