CTDSPL (CTD small phosphatase like) - Rat Genome Database

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Gene: CTDSPL (CTD small phosphatase like) Pan paniscus
Analyze
Symbol: CTDSPL
Name: CTD small phosphatase like
RGD ID: 11920442
Description: ENCODES a protein that exhibits myosin phosphatase activity (inferred); protein serine/threonine phosphatase activity (inferred); RNA polymerase II CTD heptapeptide repeat phosphatase activity (inferred); INVOLVED IN negative regulation of G1/S transition of mitotic cell cycle (ortholog); negative regulation of protein phosphorylation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Brugada syndrome (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CTD small phosphatase-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,816,360 - 37,938,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,821,114 - 37,943,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,761,101 - 37,883,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1338,093,899 - 38,166,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl338,127,971 - 38,166,485 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CTDSPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,816,360 - 37,938,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,821,114 - 37,943,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,761,101 - 37,883,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1338,093,899 - 38,166,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl338,127,971 - 38,166,485 (+)Ensemblpanpan1.1panPan2
CTDSPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38337,861,880 - 37,984,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl337,861,880 - 37,984,469 (+)EnsemblGRCh38hg38GRCh38
GRCh37337,903,371 - 38,025,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,878,673 - 38,000,964 (+)NCBINCBI36Build 36hg18NCBI36
Build 34337,878,672 - 38,000,964NCBI
Celera337,838,040 - 37,960,332 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef337,846,293 - 37,968,646 (+)NCBIHuRef
CHM1_1337,855,336 - 37,977,609 (+)NCBICHM1_1
T2T-CHM13v2.0337,866,043 - 37,988,649 (+)NCBIT2T-CHM13v2.0
Ctdspl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,751,313 - 118,873,187 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,755,521 - 118,873,066 (+)EnsemblGRCm39 Ensembl
GRCm389118,926,536 - 119,044,119 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,926,453 - 119,043,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv379118,835,654 - 118,953,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,775,151 - 118,892,696 (+)NCBIMGSCv36mm8
Celera9119,394,549 - 119,512,016 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map971.07NCBI
Ctdspl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,520,478 - 127,644,999 (+)NCBIGRCr8
mRatBN7.28118,642,729 - 118,767,238 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,642,672 - 118,767,117 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8124,244,175 - 124,368,918 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08122,443,118 - 122,567,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08120,275,667 - 120,400,578 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08127,065,292 - 127,726,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,702,534 - 127,726,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,919,687 - 126,943,278 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,960,578 - 123,993,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,974,546 - 124,009,969 (+)NCBI
Celera8117,907,827 - 117,940,703 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ctdspl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,705,664 - 4,831,726 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,705,664 - 4,831,463 (+)NCBIChiLan1.0ChiLan1.0
CTDSPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,616,264 - 7,760,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,725,446 - 7,758,067 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,687,460 - 7,802,513 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,934,233 - 8,049,568 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1237,748,828 - 7,863,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,889,843 - 8,005,071 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,882,182 - 7,997,474 (+)NCBIUU_Cfam_GSD_1.0
Ctdspl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118194,090,974 - 194,201,910 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647327,228,036 - 27,340,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647327,228,512 - 27,340,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDSPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,707,444 - 22,825,400 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11322,707,736 - 22,828,773 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21324,871,071 - 24,994,198 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTDSPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,418,855 - 1,536,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,418,848 - 1,536,457 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606310,149,434 - 10,267,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdspl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477320,158,045 - 20,290,992 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477320,154,468 - 20,290,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000005645   ⟹   ENSPPAP00000001187
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl338,127,971 - 38,162,900 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000005675   ⟹   ENSPPAP00000001189
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl338,127,971 - 38,162,900 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000005754   ⟹   ENSPPAP00000001209
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl338,129,114 - 38,166,485 (+)Ensembl
RefSeq Acc Id: XM_034956129   ⟹   XP_034812020
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2237,816,706 - 37,938,738 (+)NCBI
NHGRI_mPanPan1337,821,470 - 37,943,502 (+)NCBI
Mhudiblu_PPA_v0337,761,297 - 37,880,911 (+)NCBI
RefSeq Acc Id: XM_034956130   ⟹   XP_034812021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2237,816,360 - 37,938,738 (+)NCBI
NHGRI_mPanPan1337,821,114 - 37,943,502 (+)NCBI
Mhudiblu_PPA_v0337,761,101 - 37,883,330 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034812020 (Get FASTA)   NCBI Sequence Viewer  
  XP_034812021 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001187.1
  ENSPPAP00000001189.1
  ENSPPAP00000001209.1
Reference Protein Sequences
RefSeq Acc Id: XP_034812021   ⟸   XM_034956130
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z8N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034812020   ⟸   XM_034956129
- Peptide Label: isoform X1
- UniProtKB: A0A2R8Z8N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000001187   ⟸   ENSPPAT00000005645
RefSeq Acc Id: ENSPPAP00000001189   ⟸   ENSPPAT00000005675
RefSeq Acc Id: ENSPPAP00000001209   ⟸   ENSPPAT00000005754
Protein Domains
FCP1 homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000004964 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000005645.1 UniProtKB/TrEMBL
  ENSPPAT00000005675.1 UniProtKB/TrEMBL
  ENSPPAT00000005754.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro Dullard_phosphatase UniProtKB/TrEMBL
  FCP1_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  RNA_Pol_CTD_Phosphatase UniProtKB/TrEMBL
NCBI Gene CTDSPL ENTREZGENE
PANTHER CTD SMALL PHOSPHATASE-LIKE PROTEIN UniProtKB/TrEMBL
  DULLARD PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
PROSITE FCP1 UniProtKB/TrEMBL
SMART CPDc UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0A2R8Z8F1_PANPA UniProtKB/TrEMBL
  A0A2R8Z8L9_PANPA UniProtKB/TrEMBL
  A0A2R8Z8N7 ENTREZGENE, UniProtKB/TrEMBL