B9D2 (B9 domain containing 2) - Rat Genome Database

Name: B9D2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: B9D2 (B9 domain containing 2) Pan paniscus

Analyze

Symbol:

B9D2

Name:

B9 domain containing 2

RGD ID:

11919265

Description:

ENCODES a protein that exhibits gamma-tubulin binding (inferred); INVOLVED IN cell projection organization (inferred); cilium assembly (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN ciliary transition zone (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

B9 domain-containing protein 2; B9 protein domain 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	B9D2 (B9 domain containing 2)	NCBI	Ortholog
Mus musculus (house mouse):	B9d2 (B9 protein domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	B9d2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	B9d2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	B9d2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	B9D2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	B9D2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	B9d2 (B9 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,564,531 - 47,576,762 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,433,306 - 49,442,722 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,347,505 - 38,357,319 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	46,853,954 - 46,864,036 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	46,853,954 - 46,864,014 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

maple syrup urine disease (ISO)

Meckel syndrome (ISO)

Meckel syndrome 1 (ISO)

Meckel Syndrome 10 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium assembly (IEA)

Cellular Component

centrosome (IEA)

ciliary basal body (IEA)

ciliary transition zone (ISO)

cilium (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

membrane (IEA)

MKS complex (IEA)

Molecular Function

gamma-tubulin binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

B9D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,564,531 - 47,576,762 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,433,306 - 49,442,722 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,347,505 - 38,357,319 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	46,853,954 - 46,864,036 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	46,853,954 - 46,864,014 (-)	Ensembl	panpan1.1		panPan2

B9D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,354,417 - 41,364,149 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,354,417 - 41,364,165 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	41,860,322 - 41,870,054 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	46,552,166 - 46,561,877 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	38,660,483 - 38,669,951 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,292,411 - 38,301,879 (-)	NCBI		HuRef
CHM1_1	19	41,859,986 - 41,869,742 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,175,285 - 44,184,729 (-)	NCBI		T2T-CHM13v2.0

B9d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	25,380,205 - 25,385,987 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	25,380,205 - 25,385,983 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,680,780 - 25,686,562 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,680,780 - 25,686,558 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	26,466,177 - 26,471,577 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	25,389,918 - 25,395,318 (+)	NCBI		MGSCv36	mm8
Celera	7	20,290,071 - 20,295,470 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.97	NCBI

B9d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	90,315,472 - 90,323,143 (+)	NCBI		GRCr8
mRatBN7.2	1	81,189,395 - 81,195,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	81,189,405 - 81,195,356 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	86,581,955 - 86,587,548 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	95,133,441 - 95,139,028 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	88,337,751 - 88,343,344 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	82,473,254 - 82,479,704 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	82,473,737 - 82,479,900 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,735,237 - 83,741,209 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,888,733 - 80,894,049 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	75,629,345 - 75,634,847 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

B9d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	288,919 - 295,860 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	288,919 - 295,861 (-)	NCBI	ChiLan1.0	ChiLan1.0

B9d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,330,962 - 15,337,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	3,758,909 - 3,765,513 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	3,759,031 - 3,765,361 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B9D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,349,708 - 49,366,012 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,349,704 - 49,358,420 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	45,142,563 - 45,151,259 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B9D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	35,674,786 - 35,684,646 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	35,674,539 - 35,683,215 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	13,909,119 - 13,920,077 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B9d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	176,827 - 184,574 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	177,031 - 183,776 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003812462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000057970 ⟹ ENSPPAP00000035084

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	46,853,954 - 46,864,014 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000057977 ⟹ ENSPPAP00000035091

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	46,857,498 - 46,862,606 (-)	Ensembl

RefSeq Acc Id:

XM_003812462 ⟹ XP_003812510

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,564,531 - 47,576,762 (-)	NCBI
NHGRI_mPanPan1	19	49,433,306 - 49,442,722 (-)	NCBI
Mhudiblu_PPA_v0	19	38,347,505 - 38,357,319 (-)	NCBI
PanPan1.1	19	46,853,954 - 46,864,036 (-)	NCBI

Sequence:

show sequence

GAGCTGTGATCGAGCCACCGTACTCCAGCCTGGGTGACAGAGTGAGACCCTTTTAAGGAGCCTT
GATGGGACCTGATGACTGGCTTGATGTGGGAAATGATGGCATCTAGGATGGCATCCAGGGACAA
CATCTCCATTTCTTGATTGATAAATCAATCAATAGGAAAGAGGATTTTCTGCAAATAAGGGAAT
CTTAGTTCCTCATTTCTCTTCGCTACCCCAACCGCTCCTTGCTCAGAATCAAGCAGTAACAGTG
AACTTGGTAGTAGCTCCGAGAAGGAAGTTGGACTTATCCAACTTCCTTCCTTCCTTGTCCTTGA
GAAACCTAGGGGAACTCTAAAACGGAAGCAGAATCCACTCCCCAACTTCTCCACTCTCTGAATG
AGGAGTGATTTTTTTGCTTTGTTTTCCAGTTACAAGGCAGGGGATGTACACGAGGTCCTGGAAG
GAATTCCCCCTTGGTCCTGGTTCAATCTCTGATTTGTGATCCCGGACCACAGAGAGCTCTTCGG
TGGGGTAGGCGCAGCACGGAGCAGTTACGGATTTGCTTTTTTGGTAAAGAGGGTATCTGGGAGA
AACTGCACTCAAACTTCCTCAGCCACACTCAACATGGCAGCTTCCTAGCCACGCCCAAAATGGC
GGAACCCTTTGCCGTAGCTGGAGAGACGCTATTTTCCCAAAATGGAGCGGAGGAGGAAAATGTC
CATCACAGCTTCACCCCGCCCCCCGCAGACGGCTAGCACCAATTAGTAGCGCGCAGAGCGAGTA
CAAAGCTAGGGGAGGAGCCTGCTGTTGCCCCAGCAACAACCACGGAAACCAAGGCGAGCGCGGT
CGCGGAAGTATCGCGGCTTACATATCTCGCAGCCAGGCGGGTCCTGGGAGAGGCGCGAGCCAGG
CCTGGTCGGCGCCCGCGGAGAAAAGAAGCAGTCGAGCCCATGAACTACAACCCCGGTTGCCGCT
TTCTCCTCTCCTAACCGTTAAGTGCGCTAAGGGCCATGGCTGAGGTGCACGTGATCGGGCAGAT
CATGGGGGCCAGCGGTTTCTCGGAAAGTAGCCTCTTCTGCAAGTGGGGCATTCACACAGGGGCG
GCATGGAAGCTCCTGTCAGGCGTGCGGGAGGGCCAAACGCAAGTGGACACCCCGCAGATAGGGG
ACATGGCTTACTGGTCCCACCCCATCGACCTGCACTTCGCCACCAAAGGTCTTCAAGGCTGGCC
CCGGCTCCATTTCCAGGTGTGGTCCCAGGACAGCTTTGGCCGCTGCCAGCTTGCAGGCTATGGA
TTTTGCCATGTGCCCAGTAGCCCGGGCACCCACCAGCTGGCCTGCCCCACGTGGCGGCCCCTGG
GCAGTTGGCGAGAACAGTTGGCACGGGCTTTCGTGGGTGGTGGGCCGCAGCTGCTGCATGGGGA
CACCATCTACAGTGGGGCCGACCGCTATCGCCTGCACACAGCTGCTGGTGGCACCGTGCACCTG
GAGATCGGCCTGCTGCTCCGCAACTTCGACCGCTATGGCGTCGAGTGCTGAGGGACTCTGCCTC
CAACGTCACCACCATCCACACCCCGGACACCCAGTGATGGGGGAGGATGGCACAGTGGTCAAGA
GCACGGACTCTAGAGACCGTCAGAGCTGACCCCAGCTAAGGCATGGCACCGCTTCTGTCCTTTC
TAGGACCTCGGGGTCCCTCTGGGCCCAGTTTCCCTATCTGTAAATTGGGGACAGTAAATGTATG
GGGTCGCAGGGTGTTGAGTGACAGGAGGCTGCTTAGCCACATGGGAGGTGCTCAGTAAAGGAGA
GCAATTCTTACAGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003812510	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000035084
	ENSPPAP00000035084.1
	ENSPPAP00000035091.1

RefSeq Acc Id:	XP_003812510 ⟸ XM_003812462
- UniProtKB:	A0A2R9C9N0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEVHVIGQIMGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHPIDLH FATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWREQLARAFV GGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC hide sequence

RefSeq Acc Id:

ENSPPAP00000035091 ⟸ ENSPPAT00000057977

RefSeq Acc Id:

ENSPPAP00000035084 ⟸ ENSPPAT00000057970

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040371	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000057970.1	UniProtKB/TrEMBL
	ENSPPAT00000057977.1	UniProtKB/TrEMBL
InterPro	C2_B9-type_dom	UniProtKB/TrEMBL
KEGG Report	pps:100981952	UniProtKB/TrEMBL
NCBI Gene	B9D2	ENTREZGENE
PANTHER	B9 DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
	PTHR12968	UniProtKB/TrEMBL
Pfam	B9-C2	UniProtKB/TrEMBL
PRINTS	F138DOMAIN	UniProtKB/TrEMBL
PROSITE	C2_B9	UniProtKB/TrEMBL
UniProt	A0A2R9C037_PANPA	UniProtKB/TrEMBL
	A0A2R9C9N0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-15	B9D2	B9 domain containing 2		B9 protein domain 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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