TMEM102 (transmembrane protein 102)

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Gene: TMEM102 (transmembrane protein 102) Pan paniscus

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Symbol:

TMEM102

Name:

transmembrane protein 102

RGD ID:

11919254

Description:

INVOLVED IN positive regulation of cell adhesion (ortholog); positive regulation of T cell chemotaxis (ortholog); positive regulation of T cell migration (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cell surface (inferred); mitochondrion (inferred); protein-containing complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC100980486

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,031,670 - 15,034,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,997,475 - 17,000,624 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,469,096 - 7,471,645 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,455,716 - 7,457,947 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,455,716 - 7,457,947 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

common variable immunodeficiency (ISO)

congenital myasthenic syndrome 2A (ISO)

dyskeratosis congenita (ISO)

intellectual disability (ISO)

Li-Fraumeni syndrome (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell adhesion (IEA,ISO)

positive regulation of T cell chemotaxis (IEA,ISO)

positive regulation of T cell migration (IEA,ISO)

regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (IEA)

regulation of peptidyl-tyrosine phosphorylation (ISO)

response to cytokine (IEA)

signal transduction (IEA)

Cellular Component

cell surface (IEA)

mitochondrion (IEA)

protein-containing complex (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TMEM102
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,031,670 - 15,034,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,997,475 - 17,000,624 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,469,096 - 7,471,645 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,455,716 - 7,457,947 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,455,716 - 7,457,947 (+)	Ensembl	panpan1.1		panPan2

TMEM102
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	7,435,435 - 7,437,679 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	7,435,435 - 7,437,679 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	7,338,754 - 7,340,998 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	7,279,486 - 7,281,722 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	7,364,650 - 7,366,886 (+)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	7,232,706 - 7,234,942 (+)	NCBI		HuRef
CHM1_1	17	7,347,856 - 7,350,092 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	7,339,490 - 7,341,734 (+)	NCBI		T2T-CHM13v2.0

Tmem102
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,694,421 - 69,696,450 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	69,694,429 - 69,696,450 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	69,803,595 - 69,805,624 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,803,603 - 69,805,624 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,617,097 - 69,619,126 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	70,387,710 - 70,389,731 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	69,619,798 - 69,621,819 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.88	NCBI

Tmem102
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	55,022,625 - 55,025,676 (-)	NCBI		GRCr8
mRatBN7.2	10	54,523,901 - 54,525,997 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	54,523,585 - 54,525,990 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	59,186,413 - 59,188,454 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	58,674,979 - 58,677,020 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	54,182,628 - 54,184,669 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	56,410,898 - 56,413,154 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	56,410,918 - 56,412,544 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	56,155,947 - 56,160,137 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	56,624,941 - 56,636,020 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	53,678,163 - 53,679,762 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Tmem102
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	9,489,867 - 9,493,275 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	9,489,867 - 9,493,275 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM102
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	32,365,331 - 32,367,785 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	32,366,159 - 32,367,771 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	32,503,484 - 32,505,881 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	32,471,056 - 32,473,453 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	32,471,827 - 32,473,439 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	32,436,290 - 32,438,687 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	32,395,022 - 32,397,419 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	32,572,290 - 32,574,687 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem102
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	47,243,120 - 47,246,387 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	718,923 - 720,553 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	718,513 - 720,553 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM102
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	52,739,238 - 52,741,322 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	52,738,942 - 52,749,326 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	55,011,104 - 55,013,288 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM102
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,811,966 - 6,814,303 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	6,812,203 - 6,814,961 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	14,594,091 - 14,596,295 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem102
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	10,046,666 - 10,052,108 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	10,047,087 - 10,049,324 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003810086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000038274 ⟹ ENSPPAP00000015583

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,455,716 - 7,457,947 (+)	Ensembl

RefSeq Acc Id:

XM_003810086 ⟹ XP_003810134

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,031,670 - 15,034,292 (+)	NCBI
NHGRI_mPanPan1	17	16,997,475 - 17,000,624 (+)	NCBI
Mhudiblu_PPA_v0	17	7,469,096 - 7,471,645 (+)	NCBI
PanPan1.1	17	7,455,716 - 7,457,798 (+)	NCBI

Sequence:

show sequence

GGCATCAGGAAGAAGTAACCTGTTGAATCTATTTCTGCTCCCCACCCTTACTGCTTCCCATAAG
GGGGAAGCCGCAGACTAATAAGCCTCTTCCAAAAAAGAGGTAAAGGGAGGTAGACAAGGGGCGG
TGGCGGAGGCTGGCTACTGCATTCCGTAGGAGGAGCCAACAGTTACTTTTTACCTGCTGAGTCC
GGTGAACCAGTTCATGGGGGCGGGGACCTGCATATGAGAAAAGGGCCAAGATAGAAGAGGTATT
TATTTGTTCATTTTGAGGACTAAATTTAGAACCCATCATCTACAGACCCATTTGTAGGTTGTCT
GGGGCACTCGCTCGGCCTCAGGAAGAGGGAAGAACGGGGACGACTTTGTGGCAGCAAAGCCACC
TCCCTTCCGTGTTTTCCGTAGCCCAAAGCGATAGAACCGCATGGCTTCCGCAGTCTGGGGGAGT
GCCCCCTGGTGGGGCCCGCCGCCCCCGGCCCCAGCTCGGCCGCTCACGGACATCGACTTCTGCT
CCGGGGCGCAGCTGCAGGAATTGACCCAGCTGATCCAGGAGCTGGGTGTGCAGGAGAGCTGGAG
TGACGGGCCCAAGCCGGGAGCCGATCTCCTCCGGGCCAAGGACTTTGTCTTCTCTTTGCTTGGT
CTAGTTCACCGCCGGGACCCTCGCTTTCCTCCCCAGGCAGAGCTCTTGCTGCTTCGTGGTGGGA
TTCGCGAGGGCTCCCTGGATCTGGGGCATGCACCCCTGGGTCCCTACGCCCGGGGACCTCACTA
CGATGCCGGCTTCACACTCCTAGTGCCCATGTTTTCACTGGACGGCACTGAACTGCAACTGGAC
CTGGAATCCTGTTACGCACAGGTCTGCCTCCCAGAGATGGTGTGCGGAACCCCCATCCGCGAGA
TGTGGCAGGATTGCTTAGGACCCCCAGTCCCAGCAGCACGTGATTCGATCCACCGAACGGAGAG
CGAAGAAAGTTCCAAGGACTGGCAAAGCTCTGTAGACCAGCCGCACAGCTACGTCACTGAGCAC
GAGGCGCCGGTGTCTTTGGAAAAATCACCTAGTGACGTTTCAGCGTCCGAGTCGCCTCAGCATG
ACGTCGTCGACCTTGGCTCTACCGCACCTTTGAAAACAATGAGTAGTGACGTCACCAAGGCAGC
CGTCGAAAGCCCAGTCCCAAAGCCGTCGGAGGCTCGGGAAGCGTGGCCCACATTATGTTCCGCC
CAGGTGGCTGCCTGGTTCTTTGCTACGCTGGCGGCGGTCGCCGAGTCTCTGATCCCTGTCCCGG
GTGCTCCGCGTCTGGTGCACGCAGCTCGCCACGCGGGTTTCACCACCGTCCTCCTGGCTACCCC
TGAGCCCCCTCGCCGCCTCCTGCTCTTCGACTTGATCCCAGTGGTGTCCGTGGCGGGCTGGCCC
GAGGGGGCTCGGAGCCACTCGTGGGCCGGTCCGCTGGCCTCTGAGTCGGCTTCCTTCTACCTGG
TGCCCGGCGGCGGCACCGAGCGGCCGTGCGCCTCCGCCTGGCAGCTCTGTTTTGCCCGCCAGGA
GCTGGCGCTCAAAGCGCGCATACCAGCGCCGCTGCTGCAGGCGCACGCGGCGGCTCAGGCGCTA
CTGCGCCCGCTGGTGGCCGGGACCCGGGCGGCGGCGCCCTACCTCCTGCGGACGCTGCTGTACT
GGGCGTGCGAGCGGCTGCCTGCGCTCTACCTGGCGCGGCCAGAAAATGCGGGCGCCTGCTGCCT
CGGGCTGCTAGACGAGCTGGGCCGAGTGCTCGAGGCCGGGACGTTGCCTCACTATTTTCTGAAC
GGCCGACAGCTCCGTACGGGGGACGACTCCGCTGCGCTGCTCGGAGAATTGGCCCGGCTCCGCG
GGGACCCAGCCCGGGCCCTCCGTGCCGCGGTGGAGGAGGCCAAAGTGGCCCGCAAGGGGGGCGG
TTTGGCGGGCGTGGGGGGCGGGGCCCATTAAAGACGCTGTTCCTACCAGTGGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003810134	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000015583
	ENSPPAP00000015583.1

RefSeq Acc Id:

XP_003810134 ⟸ XM_003810086

- UniProtKB:

A0A2R9AKP4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASAVWGSAPWWGPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWSDGPKPGADLLRAK
DFVFSLLGLVHRRDPRFPPQAELLLLRGGIREGSLDLGHAPLGPYARGPHYDAGFTLLVPMFSL
DGTELQLDLESCYAQVCLPEMVCGTPIREMWQDCLGPPVPAARDSIHRTESEESSKDWQSSVDQ
PHSYVTEHEAPVSLEKSPSDVSASESPQHDVVDLGSTAPLKTMSSDVTKAAVESPVPKPSEARE
AWPTLCSAQVAAWFFATLAAVAESLIPVPGAPRLVHAARHAGFTTVLLATPEPPRRLLLFDLIP
VVSVAGWPEGARSHSWAGPLASESASFYLVPGGGTERPCASAWQLCFARQELALKARIPAPLLQ
AHAAAQALLRPLVAGTRAAAPYLLRTLLYWACERLPALYLARPENAGACCLGLLDELGRVLEAG
TLPHYFLNGRQLRTGDDSAALLGELARLRGDPARALRAAVEEAKVARKGGGLAGVGGGAH

hide sequence

Ensembl Acc Id:

ENSPPAP00000015583 ⟸ ENSPPAT00000038274

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000030935	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000038274.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1410.40	UniProtKB/TrEMBL
InterPro	Mab-21_dom	UniProtKB/TrEMBL
KEGG Report	pps:100980486	UniProtKB/TrEMBL
NCBI Gene	LOC100980486	ENTREZGENE
PANTHER	CELL FATE DETERMINING PROTEIN MAB21-RELATED	UniProtKB/TrEMBL
	PTHR10656:SF48	UniProtKB/TrEMBL
SMART	Mab-21	UniProtKB/TrEMBL
UniProt	A0A2R9AKP4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-08	TMEM102	transmembrane protein 102	LOC100980486		Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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