LOC100984505 (olfactory receptor 1S2)

Gene: LOC100984505 (olfactory receptor 1S2) Pan paniscus

Analyze

Symbol:

LOC100984505 (Ensembl: OR1S2)

Name:

olfactory receptor 1S2 (Ensembl:olfactory receptor family 1 subfamily S member 2)

RGD ID:

11917745

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); prostate cancer (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	59,352,963 - 59,353,940 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	60,379,118 - 60,380,095 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	53,443,592 - 53,444,569 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,906,610 - 56,907,587 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,906,610 - 56,907,587 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100984505
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	59,352,963 - 59,353,940 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	60,379,118 - 60,380,095 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	53,443,592 - 53,444,569 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,906,610 - 56,907,587 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,906,610 - 56,907,587 (-)	Ensembl	panpan1.1		panPan2

OR1S2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	58,203,204 - 58,204,142 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	58,203,204 - 58,204,142 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	57,970,676 - 57,971,614 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,727,252 - 57,728,229 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	57,727,251 - 57,728,229	NCBI
Celera	11	55,329,099 - 55,330,076 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	54,318,485 - 54,319,462 (-)	NCBI		HuRef
CHM1_1	11	57,836,704 - 57,837,681 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	58,152,627 - 58,153,565 (-)	NCBI		T2T-CHM13v2.0

Or1s2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	13,757,912 - 13,758,978 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	13,755,242 - 13,760,284 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	13,780,548 - 13,781,614 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	13,777,878 - 13,782,920 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	13,855,038 - 13,856,104 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	13,847,633 - 13,848,586 (+)	NCBI		MGSCv36	mm8
Celera	19	14,451,281 - 14,452,347 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.87	NCBI

OR1S1P
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,141,583 - 38,142,559 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	37,685,900 - 37,686,838 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	38,816,562 - 38,817,539 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	38,400,298 - 38,401,272 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	37,972,662 - 37,973,600 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	38,599,836 - 38,600,774 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100512519
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	12,854,704 - 12,855,693 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,513,033 - 12,516,021 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103235179
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,053,977 - 15,055,511 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	112,376,153 - 112,377,391 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000027468 ⟹ ENSPPAP00000006332

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	56,906,610 - 56,907,587 (-)	Ensembl

RefSeq Acc Id:

XM_003826386 ⟹ XP_003826434

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	59,352,963 - 59,353,940 (-)	NCBI
NHGRI_mPanPan1	11	60,379,118 - 60,380,095 (-)	NCBI
Mhudiblu_PPA_v0	11	53,443,592 - 53,444,569 (-)	NCBI
PanPan1.1	11	56,906,610 - 56,907,587 (-)	NCBI

Sequence:

show sequence

ATGAAGACTTTGTGTTCCTTTCTTCAGATCAGCAGAAATATGTATCAAGAAAACCAAACCACCA
TCACTGAATTCATTCTCCTGGGACTCTCCAACCAGGCTGAACATCAAAACCTCCTCTTTGTGCT
TTTCCTGAGTATGTATGTGGTCACTGTGGTTGGGAATGGGCTCATCATTCTGGATATCAGCTTG
GATATATACCTTCACACCCCCATGTATCTCTTCCTTGCCTACCTATCCTTTGCTGATATTTCCT
CCATTTCCAACTCAGTCCCCAAAATGCTGGTGAATATTCAAACCAACAGCCAATCCATCTCTTA
TGAGAGCTGCATCACACAGATGTACTTTTCTATTGTGTTTGTCGTCATTGACAATTTGCTTTTG
GGGACCATGGCCTTCGACCACTTTGTGGCGATCTGCCACCCTCTGAACTATACAACTTTCATGC
GGCCCAGGTTCGGCACTTTGCTCACAGTCATCTCGTGGTTCCTCAGTAATATTATTGCTCTTAC
ACACACCCTTCTGCTCATTCAATTGCTCTTCTGTGACCACAACACTCTCCCACACTTCTTCTGT
GACTTGGCCCCTCTGCTCAAACTGTCCTGTTCAGATACAATGATCAATGAGCTTGTGTTGTTTA
TTGTGGGTTTATCAGTTATCATCTTCCCCTTTGTACTCATCTTCTTCTCCTATGTCTGCATCAT
CAGAGCTGTCCTGAGAGTATCTTCCACACAGGGAAAGTGGAAAGCCTTCTCCACTTGTGGCTCT
CACCTGACAATTGCATTACTGTTCTACGGAACCATTGTAGGCGTTGACTTTTTCCCCTCCTCCA
CTCACCCTGAGGACACTGATAAGATTGGTGCTGTCCTATTCACTGTGGTGACACCCATGATGAA
CCCCTTCATCTACAGCTTGAGGAATAAGGATATGAAAGGTGCCCTGAGAAAGCTCATCAACAGA
AAAATTTCTTCCCTTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003826434	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006332.1

RefSeq Acc Id:

XP_003826434 ⟸ XM_003826386

- UniProtKB:

A0A2R8ZTY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTLCSFLQISRNMYQENQTTITEFILLGLSNQAEHQNLLFVLFLSMYVVTVVGNGLIILDISL
DIYLHTPMYLFLAYLSFADISSISNSVPKMLVNIQTNSQSISYESCITQMYFSIVFVVIDNLLL
GTMAFDHFVAICHPLNYTTFMRPRFGTLLTVISWFLSNIIALTHTLLLIQLLFCDHNTLPHFFC
DLAPLLKLSCSDTMINELVLFIVGLSVIIFPFVLIFFSYVCIIRAVLRVSSTQGKWKAFSTCGS
HLTIALLFYGTIVGVDFFPSSTHPEDTDKIGAVLFTVVTPMMNPFIYSLRNKDMKGALRKLINR
KISSL

hide sequence

RefSeq Acc Id:

ENSPPAP00000006332 ⟸ ENSPPAT00000027468

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000024880	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000027468.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100984505	UniProtKB/TrEMBL
NCBI Gene	LOC100984505	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 1S1-RELATED	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZTY9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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