CRAT (carnitine O-acetyltransferase) - Rat Genome Database

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Gene: CRAT (carnitine O-acetyltransferase) Pan paniscus
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Symbol: CRAT
Name: carnitine O-acetyltransferase
RGD ID: 11915204
Description: ENCODES a protein that exhibits acyl-CoA oxidase activity (ortholog); carnitine O-acetyltransferase activity (ortholog); INVOLVED IN carnitine metabolic process, CoA-linked (ortholog); fatty acid beta-oxidation using acyl-CoA oxidase (ortholog); fatty acid metabolic process (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Carnitine Acetyltransferase Deficiency (ortholog); neurodegeneration with brain iron accumulation (ortholog); Neurodegeneration with Brain Iron Accumulation 8 (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,880,057 - 128,896,484 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,880,057 - 128,896,484 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09100,220,019 - 100,236,061 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CRAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,880,057 - 128,896,484 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,880,057 - 128,896,484 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09100,220,019 - 100,236,061 (-)NCBIMhudiblu_PPA_v0panPan3
CRAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9129,094,142 - 129,111,189 (-)EnsemblGRCh38hg38GRCh38
GRCh389129,094,794 - 129,110,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,857,073 - 131,873,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,896,894 - 130,912,904 (-)NCBINCBI36hg18NCBI36
Build 349128,936,628 - 128,952,637NCBI
Celera9102,509,370 - 102,525,353 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9101,464,043 - 101,480,035 (-)NCBIHuRef
CHM1_19132,007,896 - 132,023,887 (-)NCBICHM1_1
Crat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,290,488 - 30,306,029 (-)NCBIGRCm39mm39
GRCm39 Ensembl230,290,483 - 30,305,825 (-)Ensembl
GRCm38230,400,476 - 30,416,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,400,471 - 30,415,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,255,996 - 30,271,268 (-)NCBIGRCm37mm9NCBIm37
MGSCv36230,222,485 - 30,237,757 (-)NCBImm8
Celera230,105,381 - 30,120,546 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.69NCBI
Crat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,675,684 - 13,689,282 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl313,675,684 - 13,689,255 (-)Ensembl
Rnor_6.038,967,984 - 8,981,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,968,417 - 8,981,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,320,758 - 14,334,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,447,585 - 9,461,180 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.139,447,886 - 9,461,480 (-)NCBI
Celera38,442,229 - 8,455,824 (-)NCBICelera
Cytogenetic Map3p12NCBI
Crat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,417,608 - 1,428,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,417,608 - 1,428,720 (-)NCBIChiLan1.0ChiLan1.0
CRAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,566,708 - 54,580,301 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,566,407 - 54,580,025 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,762,362 - 53,775,887 (+)NCBI
ROS_Cfam_1.0955,462,309 - 55,475,915 (+)NCBI
UMICH_Zoey_3.1954,248,963 - 54,262,568 (+)NCBI
UNSW_CanFamBas_1.0954,560,854 - 54,574,458 (+)NCBI
UU_Cfam_GSD_1.0954,654,564 - 54,668,171 (+)NCBI
Crat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,755,044 - 196,768,721 (-)NCBI
SpeTri2.0NW_00493648716,523,571 - 16,537,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,386,650 - 269,401,331 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,387,430 - 269,401,334 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,403,630 - 303,417,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,057,365 - 9,072,692 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,058,824 - 9,072,813 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666096491,149 - 506,483 (-)NCBIVero_WHO_p1.0
Crat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,002,032 - 6,013,489 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000015244   ⟹   ENSPPAP00000003314
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,880,057 - 128,896,484 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000015280   ⟹   ENSPPAP00000003325
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9128,880,675 - 128,896,188 (-)Ensembl
RefSeq Acc Id: XM_003822352   ⟹   XP_003822400
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,880,057 - 128,896,484 (-)NCBI
Mhudiblu_PPA_v09100,220,019 - 100,236,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003822353   ⟹   XP_003822401
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,880,057 - 128,896,478 (-)NCBI
Mhudiblu_PPA_v09100,220,019 - 100,236,059 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008975910   ⟹   XP_008974158
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19128,880,057 - 128,896,468 (-)NCBI
Mhudiblu_PPA_v09100,220,019 - 100,236,059 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034929251   ⟹   XP_034785142
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v09100,220,019 - 100,236,061 (-)NCBI
RefSeq Acc Id: XM_034929252   ⟹   XP_034785143
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v09100,220,019 - 100,236,060 (-)NCBI
RefSeq Acc Id: XM_034929253   ⟹   XP_034785144
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v09100,220,019 - 100,236,060 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003822400   ⟸   XM_003822352
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003822401   ⟸   XM_003822353
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008974158   ⟸   XM_008975910
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034785142   ⟸   XM_034929251
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034785143   ⟸   XM_034929252
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034785144   ⟸   XM_034929253
- Peptide Label: isoform X6
RefSeq Acc Id: ENSPPAP00000003314   ⟸   ENSPPAT00000015244
RefSeq Acc Id: ENSPPAP00000003325   ⟸   ENSPPAT00000015280


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000013780 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000003314 ENTREZGENE
NCBI Gene CRAT ENTREZGENE