MRPL27 (mitochondrial ribosomal protein L27) - Rat Genome Database

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Gene: MRPL27 (mitochondrial ribosomal protein L27) Pan paniscus
Analyze
Symbol: MRPL27
Name: mitochondrial ribosomal protein L27
RGD ID: 11914623
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH genetic disease (ortholog); osteogenesis imperfecta type 1 (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN cytosolic large ribosomal subunit (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L27, mitochondrial; large ribosomal subunit protein bL27m
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,559,687 - 66,565,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,366,770 - 71,372,128 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,462,261 - 44,467,605 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,336,452 - 49,341,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,336,449 - 49,341,783 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,559,687 - 66,565,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,366,770 - 71,372,128 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,462,261 - 44,467,605 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,336,452 - 49,341,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,336,449 - 49,341,783 (-)Ensemblpanpan1.1panPan2
MRPL27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,367,867 - 50,373,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,367,857 - 50,373,207 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,445,228 - 48,450,545 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,800,227 - 45,805,561 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,800,227 - 45,805,561NCBI
Celera1744,906,525 - 44,911,851 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,813,098 - 43,818,424 (-)NCBIHuRef
CHM1_11748,509,076 - 48,514,410 (-)NCBICHM1_1
T2T-CHM13v2.01751,234,852 - 51,240,169 (-)NCBIT2T-CHM13v2.0
Mrpl27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,544,593 - 94,552,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,544,593 - 94,550,915 (+)EnsemblGRCm39 Ensembl
GRCm381194,653,770 - 94,661,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,653,767 - 94,660,089 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,515,105 - 94,521,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,469,881 - 94,476,177 (+)NCBIMGSCv36mm8
Celera11104,272,932 - 104,279,168 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Mrpl27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,092,327 - 80,098,105 (+)NCBIGRCr8
mRatBN7.21079,595,459 - 79,601,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,595,479 - 79,601,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,200,105 - 84,205,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,698,181 - 83,703,944 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,213,659 - 79,219,419 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,375,572 - 82,381,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,375,572 - 82,381,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,194,189 - 82,199,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,287,375 - 83,293,135 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,301,749 - 83,307,488 (+)NCBI
Celera1078,382,862 - 78,388,622 (+)NCBICelera
Cytogenetic Map10q26NCBI
Mrpl27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,336,070 - 11,342,353 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,336,070 - 11,342,353 (+)NCBIChiLan1.0ChiLan1.0
MRPL27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,336,595 - 26,342,512 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,336,598 - 26,342,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,729,593 - 25,735,493 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,131,012 - 27,136,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,131,013 - 27,136,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,898,796 - 25,904,691 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,157,441 - 26,163,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,287,485 - 26,293,392 (-)NCBIUU_Cfam_GSD_1.0
Mrpl27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,753,466 - 25,758,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,316,169 - 11,322,515 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,316,243 - 11,321,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,663,595 - 26,664,984 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,663,884 - 26,670,167 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,754,907 - 26,761,191 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,957,287 - 42,962,554 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,957,253 - 42,962,328 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,672,969 - 13,678,299 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,301,936 - 6,309,778 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,302,983 - 6,309,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000051974   ⟹   ENSPPAP00000029126
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1749,336,449 - 49,341,783 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051977   ⟹   ENSPPAP00000029129
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1749,337,433 - 49,341,741 (-)Ensembl
RefSeq Acc Id: XM_003817456   ⟹   XP_003817504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21966,559,687 - 66,565,045 (-)NCBI
NHGRI_mPanPan11771,366,770 - 71,372,128 (-)NCBI
Mhudiblu_PPA_v01744,462,261 - 44,467,605 (-)NCBI
PanPan1.11749,336,452 - 49,341,783 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029126
  ENSPPAP00000029126.1
  ENSPPAP00000029129.1
Reference Protein Sequences
RefSeq Acc Id: XP_003817504   ⟸   XM_003817456
- UniProtKB: A0A2R9BR84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000029126   ⟸   ENSPPAT00000051974
RefSeq Acc Id: ENSPPAP00000029129   ⟸   ENSPPAT00000051977


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037578 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051974.1 UniProtKB/TrEMBL
  ENSPPAT00000051977.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/TrEMBL
InterPro Ribosomal_L27 UniProtKB/TrEMBL
KEGG Report pps:100988470 UniProtKB/TrEMBL
NCBI Gene MRPL27 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR15893 UniProtKB/TrEMBL
Pfam Ribosomal_L27 UniProtKB/TrEMBL
PRINTS RIBOSOMALL27 UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal L27 protein-like UniProtKB/TrEMBL
UniProt A0A2R9BHJ2_PANPA UniProtKB/TrEMBL
  A0A2R9BR84 ENTREZGENE, UniProtKB/TrEMBL