PYM1 (PYM homolog 1, exon junction complex associated factor) - Rat Genome Database

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Gene: PYM1 (PYM homolog 1, exon junction complex associated factor) Pan paniscus
Analyze
Symbol: PYM1
Name: PYM homolog 1, exon junction complex associated factor
RGD ID: 11914489
Description: ENCODES a protein that exhibits ribosome binding (inferred); RNA binding (inferred); INVOLVED IN exon-exon junction complex disassembly (inferred); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (inferred); positive regulation of translation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell junction (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: partner of Y14 and mago; WIBG; within bgcn homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,400,904 - 38,427,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,397,848 - 38,424,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,984,385 - 33,010,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,710,685 - 33,736,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,705,815 - 33,736,389 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PYM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,400,904 - 38,427,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,397,848 - 38,424,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,984,385 - 33,010,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,710,685 - 33,736,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,705,815 - 33,736,389 (+)Ensemblpanpan1.1panPan2
PYM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,901,413 - 55,927,894 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,901,413 - 55,932,618 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,295,197 - 56,321,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,581,464 - 54,607,964 (-)NCBINCBI36Build 36hg18NCBI36
Celera1255,948,454 - 55,974,296 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,334,131 - 53,360,693 (-)NCBIHuRef
CHM1_11256,262,385 - 56,288,825 (-)NCBICHM1_1
T2T-CHM13v2.01255,868,158 - 55,894,956 (-)NCBIT2T-CHM13v2.0
Pym1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,579,989 - 128,602,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,583,758 - 128,602,433 (+)EnsemblGRCm39 Ensembl
GRCm3810128,747,879 - 128,766,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,747,889 - 128,766,564 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,184,935 - 128,203,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,150,911 - 128,169,039 (+)NCBIMGSCv36mm8
Celera10131,139,947 - 131,158,776 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.14NCBI
Pym1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,761,556 - 1,785,318 (+)NCBIGRCr8
mRatBN7.271,177,746 - 1,200,899 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,178,008 - 1,198,937 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,941,279 - 3,961,994 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,816,941 - 5,837,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,113,856 - 6,134,568 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,172,798 - 3,193,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,173,287 - 3,193,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.073,145,368 - 3,165,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,048,477 - 2,069,380 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,043,719 - 2,068,896 (+)NCBI
Celera71,049,066 - 1,069,729 (+)NCBICelera
Cytogenetic Map7q11NCBI
Pym1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,498,822 - 3,514,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,499,217 - 3,515,108 (-)NCBIChiLan1.0ChiLan1.0
PYM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110251,493 - 266,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10251,657 - 266,538 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10313,556 - 329,002 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010258,425 - 273,883 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10258,435 - 273,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110236,317 - 251,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010479,055 - 494,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010603,362 - 618,810 (-)NCBIUU_Cfam_GSD_1.0
Pym1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,528,452 - 58,549,371 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646320,864 - 341,994 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646320,864 - 341,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,308,144 - 21,329,339 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,308,877 - 21,329,329 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,789,079 - 22,811,998 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PYM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,842,224 - 51,868,394 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037194,121,302 - 194,149,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pym1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,118,615 - 12,136,561 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480212,118,861 - 12,136,473 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000064996   ⟹   ENSPPAP00000042067
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,705,815 - 33,734,385 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065000   ⟹   ENSPPAP00000042071
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,710,941 - 33,736,389 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065001   ⟹   ENSPPAP00000042072
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,711,661 - 33,734,385 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065002   ⟹   ENSPPAP00000042073
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,711,826 - 33,724,457 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065003   ⟹   ENSPPAP00000042074
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,711,882 - 33,736,389 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065004   ⟹   ENSPPAP00000042075
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,731,296 - 33,735,931 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065005   ⟹   ENSPPAP00000042076
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,733,634 - 33,735,931 (+)Ensembl
RefSeq Acc Id: XM_003807536   ⟹   XP_003807584
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,401,757 - 38,427,336 (+)NCBI
NHGRI_mPanPan11238,398,595 - 38,424,108 (+)NCBI
Mhudiblu_PPA_v01232,985,101 - 33,010,649 (+)NCBI
PanPan1.11233,711,883 - 33,736,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959693   ⟹   XP_008957941
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,400,904 - 38,427,336 (+)NCBI
NHGRI_mPanPan11238,397,848 - 38,424,108 (+)NCBI
Mhudiblu_PPA_v01232,984,385 - 33,010,649 (+)NCBI
PanPan1.11233,710,943 - 33,736,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055095560   ⟹   XP_054951535
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,401,176 - 38,427,336 (+)NCBI
NHGRI_mPanPan11238,397,948 - 38,424,108 (+)NCBI
RefSeq Acc Id: XM_063593451   ⟹   XP_063449521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,401,887 - 38,427,336 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008957941   ⟸   XM_008959693
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CJC7 (UniProtKB/TrEMBL),   A0A2R9CJE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003807584   ⟸   XM_003807536
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CJF1 (UniProtKB/TrEMBL),   A0A2R9CJD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000042067   ⟸   ENSPPAT00000064996
RefSeq Acc Id: ENSPPAP00000042074   ⟸   ENSPPAT00000065003
RefSeq Acc Id: ENSPPAP00000042073   ⟸   ENSPPAT00000065002
RefSeq Acc Id: ENSPPAP00000042072   ⟸   ENSPPAT00000065001
RefSeq Acc Id: ENSPPAP00000042071   ⟸   ENSPPAT00000065000
RefSeq Acc Id: ENSPPAP00000042076   ⟸   ENSPPAT00000065005
RefSeq Acc Id: ENSPPAP00000042075   ⟸   ENSPPAT00000065004
RefSeq Acc Id: XP_054951535   ⟸   XM_055095560
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063449521   ⟸   XM_063593451
- Peptide Label: isoform X1
Protein Domains
WIBG Mago-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064996.1 UniProtKB/TrEMBL
  ENSPPAT00000065000.1 UniProtKB/TrEMBL
  ENSPPAT00000065001.1 UniProtKB/TrEMBL
  ENSPPAT00000065002.1 UniProtKB/TrEMBL
  ENSPPAT00000065003.1 UniProtKB/TrEMBL
  ENSPPAT00000065004.1 UniProtKB/TrEMBL
  ENSPPAT00000065005.1 UniProtKB/TrEMBL
InterPro PYM1 UniProtKB/TrEMBL
  WIBG_mago-bd UniProtKB/TrEMBL
  WIBG_N_sf UniProtKB/TrEMBL
KEGG Report pps:100985035 UniProtKB/TrEMBL
NCBI Gene PYM1 ENTREZGENE
PANTHER PARTNER OF Y14 AND MAGO UniProtKB/TrEMBL
  PTHR22959 UniProtKB/TrEMBL
Pfam Mago-bind UniProtKB/TrEMBL
SMART Mago-bind UniProtKB/TrEMBL
Superfamily-SCOP SSF101931 UniProtKB/TrEMBL
UniProt A0A2R9CJC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CJD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CJE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CJF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CM26_PANPA UniProtKB/TrEMBL
  A0A2R9CS85_PANPA UniProtKB/TrEMBL
  A0A2R9CS86_PANPA UniProtKB/TrEMBL