LOC100992458 (olfactory receptor 10A7)

Gene: LOC100992458 (olfactory receptor 10A7) Pan paniscus

Analyze

Symbol:

LOC100992458 (Ensembl: OR10A7)

Name:

olfactory receptor 10A7 (Ensembl:olfactory receptor family 10 subfamily A member 7)

RGD ID:

11913754

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,953,141 - 38,954,699 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,949,910 - 38,951,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	33,526,169 - 33,527,727 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	34,254,877 - 34,255,827 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	34,254,877 - 34,255,827 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100992458
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,953,141 - 38,954,699 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,949,910 - 38,951,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	33,526,169 - 33,527,727 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	34,254,877 - 34,255,827 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	34,254,877 - 34,255,827 (-)	Ensembl	panpan1.1		panPan2

OR10A7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	55,221,025 - 55,221,975 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	55,221,025 - 55,221,975 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	55,614,809 - 55,615,759 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	53,901,076 - 53,902,026 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	53,901,075 - 53,902,026	NCBI
Celera	12	55,266,664 - 55,267,614 (+)	NCBI		Celera
Cytogenetic Map	12	q13.2	NCBI
HuRef	12	52,653,329 - 52,654,279 (+)	NCBI		HuRef
CHM1_1	12	55,581,643 - 55,582,593 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	55,187,580 - 55,188,530 (+)	NCBI		T2T-CHM13v2.0

Or10am5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	6,517,198 - 6,523,354 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	6,516,268 - 6,525,949 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	6,514,199 - 6,520,355 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	6,513,269 - 6,522,950 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	6,467,185 - 6,468,138 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	6,118,559 - 6,119,512 (-)	NCBI		MGSCv36	mm8
Celera	7	6,244,808 - 6,245,761 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	3.78	NCBI

Or10am5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	76,368,159 - 76,369,112 (+)	NCBI		GRCr8
mRatBN7.2	1	67,335,054 - 67,336,007 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	67,326,477 - 67,338,183 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	72,686,405 - 72,687,358 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	81,323,514 - 81,324,467 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,521,246 - 74,522,199 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	70,437,776 - 70,438,729 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	70,437,776 - 70,438,729 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,833,479 - 71,834,432 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	65,743,107 - 65,744,060 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	65,821,217 - 65,822,171 (+)	NCBI
Celera	1	65,087,352 - 65,088,305 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

OR10A7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	142,252 - 143,208 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	142,252 - 143,199 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	46,137,192 - 46,138,139 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	146,682 - 147,629 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	146,682 - 147,629 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	141,236 - 142,183 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	143,312 - 144,259 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	46,518,366 - 46,519,313 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101960166
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	60,577,732 - 60,578,682 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936891	239,618 - 240,568 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936891	239,618 - 240,568 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OR10A7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	20,286,575 - 20,287,525 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	20,286,199 - 20,287,751 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103238457
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	51,268,567 - 51,272,148 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	51,271,133 - 51,272,083 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	194,748,625 - 194,749,575 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003807555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000023846 ⟹ ENSPPAP00000005230

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	34,254,877 - 34,255,827 (-)	Ensembl

RefSeq Acc Id:

XM_003807555 ⟹ XP_003807603

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	38,953,141 - 38,954,699 (-)	NCBI
NHGRI_mPanPan1	12	38,949,910 - 38,951,468 (-)	NCBI
Mhudiblu_PPA_v0	12	33,526,169 - 33,527,727 (-)	NCBI
PanPan1.1	12	34,254,877 - 34,255,827 (-)	NCBI

Sequence:

show sequence

ATGATCTGTGAAAATCACACCACAGTCACTGAATTTATTCTTCTTGGTTTTACAAACAACCCCG
AGATGCAAGTTTCCCTCTTTATTTTTTTCCTGGCCATTTATACAGTCACTTTGTTGGGCAACTT
TCTTATTGTCACAGTTACCAGTGTGGATCCCGCACTTCAAACACCCATGTACTTCTTTCTTCGA
AATCTATCACTTCTTGAAGTATGTTTCACCTTGGTTATGGTGCCAAAAATGCTTGTAGATCTAG
TGTCCCCAAGGAAAATAATCTCTTTTGTGGGCTGTGGTACCCAGATGTACTTCTTCTTCTTATT
TGGCAGTTCTGAATGTTTCCTTCTCTCCATGATGGCTTATGATCGCTTTGTGGCCATCTGTAAC
CCTCTCCATTATTCAGTCATAATGAACAGGTCCCTATGCTTGTGGATGGCCATAGGCTCTTGGA
TGTCTGGTGTTCCTGTGTCTATGCTACAGACAGCTTGGATGATGGCCCTTCCTTTCTGTGGACC
AAATGCCGTGGACCACTTTTTCTGTGATGGTCCCCCAGTGTTAAAACTAGTCACAGTGGATACA
ACCATGTATGAAATGCAAGCACTTGCCTCCACACTCCTGTTTATCATGTTTCCCTTTTCTCTCA
TTTTGGTTTCCTACACCCGCATTATCATAACAATTCTGAGGATGTCCTCTGCCACTGGCCGCCA
GAAGGCATTTTCTACTTGTTCCTCACACCTCATTGTGGTGTCCCTCTTCTATGGAACAGCCAGT
CTGACCTACCTGCGGCCCAAATCAAACCAGTCCCCTGAGAGCAAGAAGCTAGTGTCATTGTCCT
ACACTGTCATCACACCTATGCTAAACCCCATCATCTACAGCCTGAGGAACAATGAAGTGAAAGG
GGCTGTCAAGAGGACAATCACTCAAAAAGTCTTACAGAAGTTAGATGTGTTTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003807603	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005230
	ENSPPAP00000005230.1

RefSeq Acc Id:

XP_003807603 ⟸ XM_003807555

- UniProtKB:

A0A2R8ZMQ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MICENHTTVTEFILLGFTNNPEMQVSLFIFFLAIYTVTLLGNFLIVTVTSVDPALQTPMYFFLR
NLSLLEVCFTLVMVPKMLVDLVSPRKIISFVGCGTQMYFFFLFGSSECFLLSMMAYDRFVAICN
PLHYSVIMNRSLCLWMAIGSWMSGVPVSMLQTAWMMALPFCGPNAVDHFFCDGPPVLKLVTVDT
TMYEMQALASTLLFIMFPFSLILVSYTRIIITILRMSSATGRQKAFSTCSSHLIVVSLFYGTAS
LTYLRPKSNQSPESKKLVSLSYTVITPMLNPIIYSLRNNEVKGAVKRTITQKVLQKLDVF

hide sequence

RefSeq Acc Id:

ENSPPAP00000005230 ⟸ ENSPPAT00000023846

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000021764	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000023846.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100992458	UniProtKB/TrEMBL
NCBI Gene	LOC100992458	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 10A7	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZMQ2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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