CLYBL (citramalyl-CoA lyase) - Rat Genome Database

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Gene: CLYBL (citramalyl-CoA lyase) Pan paniscus
Analyze
Symbol: CLYBL
Name: citramalyl-CoA lyase
RGD ID: 11912821
Description: ENCODES a protein that exhibits (S)-citramalyl-CoA lyase activity (ortholog); magnesium ion binding (ortholog); malate synthase activity (ortholog); INVOLVED IN positive regulation of cobalamin metabolic process (ortholog); protein homotrimerization (ortholog); regulation of cobalamin metabolic process (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: citramalyl-CoA lyase, mitochondrial; citrate lyase beta like; citrate lyase subunit beta-like protein, mitochondrial; citrate lyase subunit beta-like protein, mitochondrial-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,912,758 - 100,198,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,912,773 - 100,195,417 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,774,572 - 81,066,375 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
CLYBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11399,912,758 - 100,198,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1399,912,773 - 100,195,417 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01380,774,572 - 81,066,375 (+)NCBIMhudiblu_PPA_v0panPan3
CLYBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1399,606,669 - 99,897,134 (+)EnsemblGRCh38hg38GRCh38
GRCh381399,606,690 - 99,909,444 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713100,258,918 - 100,561,698 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361399,056,937 - 99,342,825 (+)NCBINCBI36hg18NCBI36
Build 341399,056,936 - 99,342,824NCBI
Celera1381,103,446 - 81,393,885 (+)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1380,853,642 - 81,143,528 (+)NCBIHuRef
CHM1_113100,228,927 - 100,519,376 (+)NCBICHM1_1
Clybl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914122,408,289 - 122,639,646 (+)NCBIGRCm39mm39
GRCm39 Ensembl14122,419,116 - 122,639,646 (+)Ensembl
GRCm3814122,170,994 - 122,402,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14122,181,704 - 122,402,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714122,580,916 - 122,801,456 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614121,316,901 - 121,537,408 (+)NCBImm8
Celera14120,744,413 - 120,964,342 (+)NCBICelera
Cytogenetic Map14E5NCBI
Clybl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21599,283,644 - 99,505,697 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1599,283,650 - 99,505,695 (+)Ensembl
Rnor_6.015108,608,203 - 108,838,222 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15108,608,204 - 108,838,235 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015111,996,327 - 112,224,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415107,313,924 - 107,539,458 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115107,403,371 - 107,555,046 (+)NCBI
Celera1598,056,530 - 98,276,073 (+)NCBICelera
Cytogenetic Map15q25NCBI
Clybl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540410,814,307 - 11,034,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540410,813,161 - 11,016,687 (-)NCBIChiLan1.0ChiLan1.0
CLYBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12249,608,997 - 49,893,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2249,608,358 - 49,871,572 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2249,389,904 - 49,674,862 (+)NCBI
ROS_Cfam_1.02250,050,746 - 50,335,889 (+)NCBI
UMICH_Zoey_3.12249,702,099 - 50,000,006 (+)NCBI
UNSW_CanFamBas_1.02249,735,357 - 50,033,523 (+)NCBI
UU_Cfam_GSD_1.02249,772,072 - 50,070,593 (+)NCBI
Clybl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945185,032,471 - 185,285,822 (+)NCBI
SpeTri2.0NW_00493647210,666,345 - 10,919,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLYBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,507,877 - 68,767,546 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,507,828 - 68,768,322 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,887,675 - 76,025,089 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLYBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1378,258,096 - 78,574,515 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604634,754,124 - 35,069,782 (+)NCBIVero_WHO_p1.0
Clybl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479311,240,495 - 11,479,386 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039601   ⟹   ENSPPAP00000016902
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1399,912,773 - 100,195,417 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039603   ⟹   ENSPPAP00000016904
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1399,912,773 - 100,195,417 (+)Ensembl
RefSeq Acc Id: XM_003832050   ⟹   XP_003832098
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11399,912,758 - 100,196,574 (+)NCBI
Mhudiblu_PPA_v01380,774,572 - 81,063,015 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347493   ⟹   XP_014202979
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11399,912,758 - 100,198,856 (+)NCBI
Mhudiblu_PPA_v01380,774,572 - 81,066,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347494   ⟹   XP_014202980
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11399,912,758 - 100,196,574 (+)NCBI
Mhudiblu_PPA_v01380,774,572 - 81,063,015 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936912   ⟹   XP_034792803
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01380,774,572 - 81,063,015 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832098 (Get FASTA)   NCBI Sequence Viewer  
  XP_014202979 (Get FASTA)   NCBI Sequence Viewer  
  XP_014202980 (Get FASTA)   NCBI Sequence Viewer  
  XP_034792803 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_014202979   ⟸   XM_014347493
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003832098   ⟸   XM_003832050
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014202980   ⟸   XM_014347494
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034792803   ⟸   XM_034936912
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000016904   ⟸   ENSPPAT00000039603
RefSeq Acc Id: ENSPPAP00000016902   ⟸   ENSPPAT00000039601


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031545 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000016902 ENTREZGENE
  ENSPPAP00000016904 ENTREZGENE
NCBI Gene CLYBL ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-03-25 CLYBL  citramalyl-CoA lyase  CLYBL  citrate lyase beta like  Symbol and/or name change 5135510 APPROVED