SNAP29 (synaptosome associated protein 29) - Rat Genome Database

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Gene: SNAP29 (synaptosome associated protein 29) Pan paniscus
Analyze
Symbol: SNAP29
Name: synaptosome associated protein 29
RGD ID: 11909961
Description: ENCODES a protein that exhibits SNAP receptor activity (inferred); syntaxin binding (inferred); INVOLVED IN regulation of synaptic vesicle cycle (ortholog); regulation of synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CEDNIK syndrome (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptosomal-associated protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,565,341 - 30,598,111 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,114,289 - 33,143,796 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,082,622 - 3,115,325 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,572,675 - 19,604,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,572,618 - 19,605,931 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SNAP29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,565,341 - 30,598,111 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,114,289 - 33,143,796 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,082,622 - 3,115,325 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,572,675 - 19,604,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,572,618 - 19,605,931 (+)Ensemblpanpan1.1panPan2
SNAP29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,859,007 - 20,891,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,859,007 - 20,891,214 (+)EnsemblGRCh38hg38GRCh38
GRCh372221,213,295 - 21,245,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,543,292 - 19,574,109 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,537,845 - 19,568,663NCBI
Celera224,704,631 - 4,736,842 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,481,433 - 4,513,635 (+)NCBIHuRef
CHM1_12221,213,478 - 21,245,708 (+)NCBICHM1_1
T2T-CHM13v2.02221,267,728 - 21,299,920 (+)NCBIT2T-CHM13v2.0
Snap29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,223,864 - 17,248,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,223,850 - 17,248,691 (+)EnsemblGRCm39 Ensembl
GRCm381617,406,000 - 17,430,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,405,986 - 17,430,827 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,406,093 - 17,430,919 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,319,614 - 17,344,386 (+)NCBIMGSCv36mm8
Celera1617,978,957 - 18,003,859 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.79NCBI
Snap29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,082,721 - 97,113,195 (-)NCBIGRCr8
mRatBN7.21183,578,479 - 83,608,953 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,578,489 - 83,608,958 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,306,158 - 92,336,737 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,967,310 - 84,997,887 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,020,918 - 84,051,495 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,827,633 - 87,858,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,827,651 - 87,858,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,883,352 - 90,914,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,579,141 - 85,609,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,619,738 - 85,650,439 (-)NCBI
Celera1182,342,398 - 82,372,753 (-)NCBICelera
Cytogenetic Map11q23NCBI
Snap29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,419,821 - 19,446,665 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,419,381 - 19,446,782 (-)NCBIChiLan1.0ChiLan1.0
SNAP29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,606,195 - 30,630,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,609,158 - 30,630,262 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,564,536 - 30,588,777 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,014,732 - 32,038,982 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2632,014,976 - 32,038,981 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12630,060,478 - 30,084,729 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,685,160 - 29,709,411 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,774,254 - 30,798,700 (-)NCBIUU_Cfam_GSD_1.0
Snap29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,348,833 - 140,376,865 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,376,815 - 2,401,967 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,377,284 - 2,402,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,492,187 - 50,511,456 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,492,187 - 50,511,475 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,940,923 - 53,955,920 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,797,690 - 4,827,573 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,797,725 - 4,830,251 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,177,660 - 2,209,408 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snap29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945801,833 - 837,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945799,831 - 837,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000060940   ⟹   ENSPPAP00000038037
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2219,572,618 - 19,605,931 (+)Ensembl
RefSeq Acc Id: XM_008958536   ⟹   XP_008956784
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22330,565,381 - 30,598,111 (+)NCBI
NHGRI_mPanPan12233,114,289 - 33,143,796 (+)NCBI
Mhudiblu_PPA_v0223,082,622 - 3,115,325 (+)NCBI
PanPan1.12219,572,675 - 19,604,943 (+)NCBI
Sequence:
RefSeq Acc Id: XR_010111776
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22330,565,341 - 30,589,371 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008956784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038037.1
Reference Protein Sequences
RefSeq Acc Id: XP_008956784   ⟸   XM_008958536
- UniProtKB: A0A2R9CIL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000038037   ⟸   ENSPPAT00000060940
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041748 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060940.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene SNAP29 ENTREZGENE
PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN UniProtKB/TrEMBL
  SYNAPTOSOMAL-ASSOCIATED PROTEIN 29 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A2R9CIL4 ENTREZGENE, UniProtKB/TrEMBL