FILIP1 (filamin A interacting protein 1) - Rat Genome Database

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Gene: FILIP1 (filamin A interacting protein 1) Pan paniscus
Analyze
Symbol: FILIP1
Name: filamin A interacting protein 1
RGD ID: 11909560
Description: INVOLVED IN modification of postsynaptic structure (inferred); ASSOCIATED WITH genetic disease (ortholog); Osteoarthritis, Hip (ortholog); Stomach Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); postsynaptic actin cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: filamin-A-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,135,086 - 73,334,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,426,161 - 76,625,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,429,175 - 76,548,549 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FILIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,135,086 - 73,334,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,426,161 - 76,625,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,429,175 - 76,548,549 (-)Ensemblpanpan1.1panPan2
FILIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,291,859 - 75,493,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,291,859 - 75,493,800 (-)EnsemblGRCh38hg38GRCh38
GRCh37676,001,575 - 76,203,516 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,074,520 - 76,260,216 (-)NCBINCBI36Build 36hg18NCBI36
Celera676,411,158 - 76,596,783 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,216,562 - 73,402,078 (-)NCBIHuRef
CHM1_1676,183,855 - 76,369,757 (-)NCBICHM1_1
T2T-CHM13v2.0676,468,681 - 76,670,584 (-)NCBIT2T-CHM13v2.0
Filip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,708,461 - 79,920,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl979,712,376 - 79,920,133 (-)EnsemblGRCm39 Ensembl
GRCm38979,805,018 - 80,012,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,805,094 - 80,012,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,663,369 - 79,825,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,601,246 - 79,763,566 (-)NCBIMGSCv36mm8
Celera976,961,597 - 77,115,767 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.83NCBI
Filip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,641,509 - 89,836,772 (-)NCBIGRCr8
mRatBN7.2880,761,283 - 80,956,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,301,943 - 86,448,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0884,579,095 - 84,725,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,401,723 - 82,548,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,257,312 - 87,453,432 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,256,264 - 87,419,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0886,801,356 - 86,958,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,873,131 - 84,902,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1884,892,590 - 84,922,320 (-)NCBI
Celera880,499,964 - 80,646,261 (-)NCBICelera
Cytogenetic Map8q31NCBI
Filip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555023,823,872 - 3,903,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555023,806,016 - 3,976,013 (-)NCBIChiLan1.0ChiLan1.0
FILIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11236,939,378 - 37,146,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1236,942,790 - 37,166,589 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1236,819,013 - 37,025,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01237,643,816 - 37,668,087 (-)NCBIROS_Cfam_1.0
Filip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,355,184 - 72,518,640 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936788750,934 - 900,714 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936788737,375 - 900,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl190,427,659 - 90,638,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1190,427,529 - 90,643,061 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21101,576,029 - 101,635,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1136,620 - 315,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,419 - 237,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,305,116 - 176,541,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Filip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,380,195 - 2,501,975 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,352,322 - 2,562,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041622   ⟹   ENSPPAP00000018877
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl676,429,175 - 76,548,549 (-)Ensembl
RefSeq Acc Id: XM_003805810   ⟹   XP_003805858
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBI
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBI
Mhudiblu_PPA_v0673,135,086 - 73,334,630 (-)NCBI
PanPan1.1676,426,161 - 76,625,780 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008975243   ⟹   XP_008973491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2595,354,474 - 95,381,442 (-)NCBI
NHGRI_mPanPan1693,232,259 - 93,259,277 (-)NCBI
Mhudiblu_PPA_v0673,151,199 - 73,177,619 (-)NCBI
PanPan1.1676,442,255 - 76,468,668 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034962394   ⟹   XP_034818285
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2595,354,474 - 95,410,027 (-)NCBI
NHGRI_mPanPan1693,232,259 - 93,287,862 (-)NCBI
Mhudiblu_PPA_v0673,151,199 - 73,206,194 (-)NCBI
RefSeq Acc Id: XM_055113893   ⟹   XP_054969868
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBI
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003805858 (Get FASTA)   NCBI Sequence Viewer  
  XP_008973491 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818285 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018877.1
Reference Protein Sequences
RefSeq Acc Id: XP_003805858   ⟸   XM_003805810
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008973491   ⟸   XM_008975243
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034818285   ⟸   XM_034962394
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000018877   ⟸   ENSPPAT00000041622
RefSeq Acc Id: XP_054969868   ⟸   XM_055113893
- Peptide Label: isoform X2
Protein Domains
Cortactin-binding protein-2 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041622.1 UniProtKB/TrEMBL
InterPro Cortactin-binding_p2_N UniProtKB/TrEMBL
KEGG Report pps:100982332 UniProtKB/TrEMBL
NCBI Gene FILIP1 ENTREZGENE
PANTHER FILAMIN-A-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/TrEMBL
UniProt A0A2R9ANC9 ENTREZGENE, UniProtKB/TrEMBL