ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2) - Rat Genome Database

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Gene: ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2) Pan paniscus
Analyze
Symbol: ATPAF2
Name: ATP synthase mitochondrial F1 complex assembly factor 2
RGD ID: 11908437
Description: INVOLVED IN mitochondrial proton-transporting ATP synthase complex assembly (inferred); proton-transporting ATP synthase complex assembly (inferred); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21952,531,557 - 52,555,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,244,856 - 57,267,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01733,256,239 - 33,280,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,203,888 - 38,224,911 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,203,888 - 38,224,911 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ATPAF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21952,531,557 - 52,555,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,244,856 - 57,267,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01733,256,239 - 33,280,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,203,888 - 38,224,911 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,203,888 - 38,224,911 (+)Ensemblpanpan1.1panPan2
ATPAF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,015,059 - 18,039,168 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,977,409 - 18,039,209 (-)EnsemblGRCh38hg38GRCh38
GRCh371717,921,335 - 17,942,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,862,059 - 17,883,205 (-)NCBINCBI36Build 36hg18NCBI36
Build 341717,862,058 - 17,883,205NCBI
Celera1718,862,395 - 18,883,635 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,675,117 - 17,696,250 (-)NCBIHuRef
CHM1_11717,930,143 - 17,951,311 (-)NCBICHM1_1
T2T-CHM13v2.01717,961,855 - 17,985,971 (-)NCBIT2T-CHM13v2.0
Atpaf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,291,450 - 60,309,427 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,291,452 - 60,309,283 (-)EnsemblGRCm39 Ensembl
GRCm381160,400,624 - 60,420,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,400,626 - 60,418,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,214,126 - 60,230,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,216,819 - 60,233,200 (-)NCBIMGSCv36mm8
MGSCv361160,938,941 - 60,955,322 (-)NCBIMGSCv36mm8
Celera1166,451,218 - 66,467,374 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
Atpaf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,705,157 - 45,721,282 (-)NCBIGRCr8
mRatBN7.21045,205,658 - 45,221,891 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,197,441 - 45,221,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,905,861 - 49,921,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,396,239 - 49,411,597 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,899,842 - 44,915,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,768,539 - 46,783,889 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,768,539 - 46,783,889 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,523,866 - 46,539,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,668,951 - 46,684,301 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,682,644 - 46,697,909 (-)NCBI
Celera1044,462,874 - 44,478,224 (-)NCBICelera
Cytogenetic Map10q22NCBI
Atpaf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547811,248,781 - 11,267,158 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547811,249,073 - 11,264,249 (+)NCBIChiLan1.0ChiLan1.0
ATPAF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,478,211 - 41,498,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,478,149 - 41,498,549 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,619,742 - 41,637,643 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,587,064 - 41,604,968 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,587,065 - 41,607,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,554,805 - 41,572,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,502,229 - 41,520,121 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,694,099 - 41,712,000 (+)NCBIUU_Cfam_GSD_1.0
Atpaf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,253,148 - 61,270,728 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,593,596 - 1,614,138 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,596,520 - 1,614,095 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATPAF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,617,649 - 60,633,271 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,617,642 - 60,633,210 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATPAF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,058,404 - 17,079,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660593,828,990 - 3,854,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atpaf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,409,121 - 3,429,780 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,409,108 - 3,429,780 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000038967   ⟹   ENSPPAP00000016273
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1738,203,888 - 38,224,911 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000038973   ⟹   ENSPPAP00000016279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1738,204,073 - 38,218,208 (+)Ensembl
RefSeq Acc Id: XM_003808790   ⟹   XP_003808838
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21952,534,761 - 52,555,696 (-)NCBI
NHGRI_mPanPan11757,247,000 - 57,267,915 (-)NCBI
Mhudiblu_PPA_v01733,256,275 - 33,277,394 (+)NCBI
PanPan1.11738,203,888 - 38,224,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034942307   ⟹   XP_034798198
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21952,531,557 - 52,555,673 (-)NCBI
NHGRI_mPanPan11757,244,856 - 57,267,917 (-)NCBI
Mhudiblu_PPA_v01733,256,239 - 33,280,360 (+)NCBI
RefSeq Acc Id: XM_034942308   ⟹   XP_034798199
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21952,537,166 - 52,555,672 (-)NCBI
NHGRI_mPanPan11757,249,409 - 57,267,917 (-)NCBI
Mhudiblu_PPA_v01733,256,239 - 33,274,540 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003808838 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798198 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016273
  ENSPPAP00000016273.1
  ENSPPAP00000016279.1
Reference Protein Sequences
RefSeq Acc Id: XP_003808838   ⟸   XM_003808790
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AH11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034798198   ⟸   XM_034942307
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034798199   ⟸   XM_034942308
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000016279   ⟸   ENSPPAT00000038973
RefSeq Acc Id: ENSPPAP00000016273   ⟸   ENSPPAT00000038967


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031252 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038967.1 UniProtKB/TrEMBL
  ENSPPAT00000038973.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3580.10 UniProtKB/TrEMBL
  3.30.2180.10 UniProtKB/TrEMBL
InterPro ATP12_ATP_synth-F1-assembly UniProtKB/TrEMBL
  ATP12_ATP_synth-F1-assembly_N UniProtKB/TrEMBL
  ATP12_ortho_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100977186 UniProtKB/TrEMBL
NCBI Gene ATPAF2 ENTREZGENE
PANTHER ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2 UniProtKB/TrEMBL
  PTHR21013 UniProtKB/TrEMBL
Pfam ATP12 UniProtKB/TrEMBL
Superfamily-SCOP ATP12-like UniProtKB/TrEMBL
UniProt A0A2R9AH11 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AMU3_PANPA UniProtKB/TrEMBL