TBC1D12 (TBC1 domain family member 12) - Rat Genome Database

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Gene: TBC1D12 (TBC1 domain family member 12) Pan paniscus
Analyze
Symbol: TBC1D12
Name: TBC1 domain family member 12
RGD ID: 11906105
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28106,428,003 - 106,564,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110106,433,328 - 106,570,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01091,139,637 - 91,273,596 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,648,716 - 94,780,331 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,648,853 - 94,777,498 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
TBC1D12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28106,428,003 - 106,564,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110106,433,328 - 106,570,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01091,139,637 - 91,273,596 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,648,716 - 94,780,331 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,648,853 - 94,777,498 (+)Ensemblpanpan1.1panPan2
TBC1D12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381094,402,541 - 94,536,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1094,402,541 - 94,536,332 (+)EnsemblGRCh38hg38GRCh38
GRCh371096,162,298 - 96,296,089 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361096,152,176 - 96,286,079 (+)NCBINCBI36Build 36hg18NCBI36
Build 341096,152,341 - 96,283,858NCBI
Celera1089,902,294 - 90,036,175 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,788,795 - 89,922,598 (+)NCBIHuRef
CHM1_11096,444,196 - 96,577,901 (+)NCBICHM1_1
T2T-CHM13v2.01095,281,536 - 95,415,444 (+)NCBIT2T-CHM13v2.0
Tbc1d12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,825,035 - 38,908,103 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,825,023 - 38,908,367 (+)EnsemblGRCm39 Ensembl
GRCm381938,836,579 - 38,919,670 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,836,579 - 38,919,923 (+)EnsemblGRCm38mm10GRCm38
MGSCv371938,911,069 - 38,994,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,901,723 - 38,984,814 (+)NCBIMGSCv36mm8
Celera1939,630,227 - 39,721,564 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1933.47NCBI
Tbc1d12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,015,985 - 246,098,241 (+)NCBIGRCr8
mRatBN7.21236,603,597 - 236,685,859 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1236,603,607 - 236,685,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1245,027,340 - 245,109,670 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,920,769 - 252,003,006 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,759,020 - 244,841,257 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01257,828,474 - 257,885,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1257,517,242 - 257,883,971 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01265,008,762 - 265,091,267 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01265,297,434 - 265,341,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,156,445 - 243,215,810 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1233,694,835 - 233,777,271 (+)NCBICelera
Cytogenetic Map1q53NCBI
Tbc1d12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955507887,898 - 990,885 (+)NCBIChiLan1.0ChiLan1.0
TBC1D12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,519,852 - 8,642,836 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl288,544,872 - 8,641,062 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,697,265 - 8,819,912 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,784,149 - 8,906,743 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl288,809,169 - 8,906,452 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1288,500,154 - 8,622,780 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0288,531,679 - 8,653,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,702,336 - 8,825,246 (+)NCBIUU_Cfam_GSD_1.0
Tbc1d12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,039,826 - 39,123,010 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936601674,523 - 755,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936601674,191 - 756,639 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,829,858 - 105,920,886 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,806,384 - 105,919,986 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214115,655,391 - 115,765,692 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1987,627,092 - 87,771,645 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl987,627,703 - 87,768,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604848,408,724 - 48,569,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247375,769,000 - 5,888,326 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000040436   ⟹   ENSPPAP00000017725
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1094,648,853 - 94,777,498 (+)Ensembl
RefSeq Acc Id: XM_024930489   ⟹   XP_024786257
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,428,008 - 106,564,285 (+)NCBI
NHGRI_mPanPan110106,433,331 - 106,570,742 (+)NCBI
Mhudiblu_PPA_v01091,139,677 - 91,273,596 (+)NCBI
PanPan1.11094,648,716 - 94,780,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034931130   ⟹   XP_034787021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,428,003 - 106,564,285 (+)NCBI
NHGRI_mPanPan110106,433,328 - 106,570,742 (+)NCBI
Mhudiblu_PPA_v01091,139,637 - 91,273,596 (+)NCBI
RefSeq Acc Id: XM_055093163   ⟹   XP_054949138
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,431,713 - 106,564,285 (+)NCBI
NHGRI_mPanPan110106,437,073 - 106,570,742 (+)NCBI
RefSeq Acc Id: XM_055093164   ⟹   XP_054949139
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,471,111 - 106,564,285 (+)NCBI
NHGRI_mPanPan110106,476,427 - 106,570,742 (+)NCBI
RefSeq Acc Id: XM_063607829   ⟹   XP_063463899
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,480,714 - 106,564,285 (+)NCBI
Protein Sequences
Protein RefSeqs XP_024786257 (Get FASTA)   NCBI Sequence Viewer  
  XP_034787021 (Get FASTA)   NCBI Sequence Viewer  
  XP_054949138 (Get FASTA)   NCBI Sequence Viewer  
  XP_054949139 (Get FASTA)   NCBI Sequence Viewer  
  XP_063463899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017725.1
RefSeq Acc Id: XP_024786257   ⟸   XM_024930489
- Peptide Label: isoform X1
- UniProtKB: A0A2R9APR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034787021   ⟸   XM_034931130
- Peptide Label: isoform X2
- UniProtKB: A0A2R9APR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000017725   ⟸   ENSPPAT00000040436
RefSeq Acc Id: XP_054949138   ⟸   XM_055093163
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054949139   ⟸   XM_055093164
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063463899   ⟸   XM_063607829
- Peptide Label: isoform X4
Protein Domains
Rab-GAP TBC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031966 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040436.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
NCBI Gene TBC1D12 ENTREZGENE
PANTHER RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 12 ISOFORM X1 UniProtKB/TrEMBL
Pfam RabGAP-TBC UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A2R9APR7 ENTREZGENE, UniProtKB/TrEMBL