HACL1 (2-hydroxyacyl-CoA lyase 1) - Rat Genome Database

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Gene: HACL1 (2-hydroxyacyl-CoA lyase 1) Pan paniscus
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Symbol: HACL1
Name: 2-hydroxyacyl-CoA lyase 1
RGD ID: 11903340
Description: ENCODES a protein that exhibits 2-hydroxyacyl-CoA lyase activity (inferred); ATP binding (inferred); carbon-carbon lyase activity (inferred); INVOLVED IN lipid metabolic process (ortholog); PARTICIPATES IN phytanic acid degradation pathway; Refsum disease pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); biotinidase deficiency (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,546,138 - 15,586,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,550,904 - 15,591,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,486,897 - 15,526,552 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,823,979 - 15,863,982 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,823,979 - 15,863,982 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HACL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,546,138 - 15,586,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,550,904 - 15,591,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,486,897 - 15,526,552 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,823,979 - 15,863,982 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,823,979 - 15,863,982 (-)Ensemblpanpan1.1panPan2
HACL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,560,699 - 15,601,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,560,699 - 15,601,852 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,602,206 - 15,643,076 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,577,243 - 15,618,134 (-)NCBINCBI36Build 36hg18NCBI36
Celera315,540,467 - 15,581,279 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,537,616 - 15,578,260 (-)NCBIHuRef
CHM1_1315,553,051 - 15,593,804 (-)NCBICHM1_1
T2T-CHM13v2.0315,563,097 - 15,603,888 (-)NCBIT2T-CHM13v2.0
Hacl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,329,183 - 31,364,201 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,320,687 - 31,363,243 (-)EnsemblGRCm39 Ensembl
GRCm381431,607,226 - 31,640,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,598,730 - 31,641,286 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,420,412 - 32,454,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,436,235 - 30,469,970 (-)NCBIMGSCv36mm8
Celera1427,864,878 - 27,898,614 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.23NCBI
Hacl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,831,293 - 6,869,410 (-)NCBIGRCr8
mRatBN7.2166,826,881 - 6,863,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,824,906 - 6,863,027 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,830,764 - 6,867,047 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,975,662 - 8,011,946 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,838,214 - 6,874,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,720,047 - 7,758,119 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,714,465 - 7,758,189 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,646,580 - 7,682,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,073,038 - 7,108,830 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1167,073,036 - 7,108,828 (-)NCBI
Celera168,335,334 - 8,371,457 (+)NCBICelera
Cytogenetic Map16p16NCBI
Hacl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,053,640 - 2,096,432 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,055,774 - 2,096,260 (-)NCBIChiLan1.0ChiLan1.0
LOC608697
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12327,069,676 - 27,188,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2327,043,917 - 27,162,593 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02327,572,135 - 27,700,471 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12327,271,635 - 27,389,865 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,333,444 - 27,451,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,581,893 - 27,700,406 (+)NCBIUU_Cfam_GSD_1.0
Hacl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,684,583 - 169,717,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,823,123 - 2,856,077 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,823,183 - 2,856,077 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HACL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,766,514 - 2,840,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,786,007 - 2,840,882 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,714,442 - 2,737,983 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HACL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,360,380 - 60,433,528 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,322,722 - 60,433,647 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604133,390,238 - 33,465,437 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hacl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,079,634 - 5,145,503 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,078,925 - 5,189,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000063216   ⟹   ENSPPAP00000040301
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,823,979 - 15,863,982 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000063223   ⟹   ENSPPAP00000040307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,824,100 - 15,863,595 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000063225   ⟹   ENSPPAP00000040309
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,824,100 - 15,863,595 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000063227   ⟹   ENSPPAP00000040311
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,824,100 - 15,863,595 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000063228   ⟹   ENSPPAP00000040312
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,824,100 - 15,863,595 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000063230   ⟹   ENSPPAP00000040314
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl315,849,683 - 15,863,595 (-)Ensembl
RefSeq Acc Id: XM_003826201   ⟹   XP_003826249
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,546,138 - 15,586,459 (-)NCBI
NHGRI_mPanPan1315,550,904 - 15,591,223 (-)NCBI
Mhudiblu_PPA_v0315,486,897 - 15,526,552 (-)NCBI
PanPan1.1315,823,979 - 15,863,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034955896   ⟹   XP_034811787
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2215,546,138 - 15,586,411 (-)NCBI
NHGRI_mPanPan1315,550,904 - 15,591,175 (-)NCBI
Mhudiblu_PPA_v0315,486,897 - 15,526,506 (-)NCBI
RefSeq Acc Id: XP_003826249   ⟸   XM_003826201
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CEC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034811787   ⟸   XM_034955896
- Peptide Label: isoform X1
Ensembl Acc Id: ENSPPAP00000040312   ⟸   ENSPPAT00000063228
Ensembl Acc Id: ENSPPAP00000040311   ⟸   ENSPPAT00000063227
Ensembl Acc Id: ENSPPAP00000040309   ⟸   ENSPPAT00000063225
Ensembl Acc Id: ENSPPAP00000040307   ⟸   ENSPPAT00000063223
Ensembl Acc Id: ENSPPAP00000040301   ⟸   ENSPPAT00000063216
Ensembl Acc Id: ENSPPAP00000040314   ⟸   ENSPPAT00000063230

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063216.1 UniProtKB/TrEMBL
  ENSPPAT00000063223.1 UniProtKB/TrEMBL
  ENSPPAT00000063225.1 UniProtKB/TrEMBL
  ENSPPAT00000063227.1 UniProtKB/TrEMBL
  ENSPPAT00000063228.1 UniProtKB/TrEMBL
  ENSPPAT00000063230.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.970 UniProtKB/TrEMBL
  TPP-binding domain UniProtKB/TrEMBL
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/TrEMBL
  HACL1-like UniProtKB/TrEMBL
  THDP-binding UniProtKB/TrEMBL
  Thiamin_PyroP_enz_cen_dom UniProtKB/TrEMBL
  Thiamin_PyroP_enz_TPP-bd_dom UniProtKB/TrEMBL
  TPP_enzyme-bd_C UniProtKB/TrEMBL
KEGG Report pps:100982158 UniProtKB/TrEMBL
NCBI Gene HACL1 ENTREZGENE
PANTHER 2-HYDROXYACYL-COA LYASE 1 UniProtKB/TrEMBL
  PTHR43710 UniProtKB/TrEMBL
Pfam TPP_enzyme_C UniProtKB/TrEMBL
  TPP_enzyme_M UniProtKB/TrEMBL
  TPP_enzyme_N UniProtKB/TrEMBL
Superfamily-SCOP SSF52467 UniProtKB/TrEMBL
  SSF52518 UniProtKB/TrEMBL
UniProt A0A2R9CEC8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CED8_PANPA UniProtKB/TrEMBL
  A0A2R9CEJ4_PANPA UniProtKB/TrEMBL
  A0A2R9CEK0_PANPA UniProtKB/TrEMBL
  A0A2R9CPF1_PANPA UniProtKB/TrEMBL
  A0A2R9CPF2_PANPA UniProtKB/TrEMBL