ANKRD13D (ankyrin repeat domain 13D) - Rat Genome Database

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Gene: ANKRD13D (ankyrin repeat domain 13D) Pan paniscus
Analyze
Symbol: ANKRD13D
Name: ankyrin repeat domain 13D
RGD ID: 11902821
Description: ENCODES a protein that exhibits ubiquitin-modified protein reader activity (inferred); INVOLVED IN negative regulation of receptor internalization (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); late endosome (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 13D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,516,182 - 68,529,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,558,676 - 69,571,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,647,609 - 62,660,766 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,961,983 - 65,974,345 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,959,474 - 65,974,345 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ANKRD13D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,516,182 - 68,529,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,558,676 - 69,571,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,647,609 - 62,660,766 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,961,983 - 65,974,345 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,959,474 - 65,974,345 (+)Ensemblpanpan1.1panPan2
ANKRD13D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,289,303 - 67,302,484 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,289,300 - 67,302,485 (+)EnsemblGRCh38hg38GRCh38
GRCh371167,056,774 - 67,069,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,813,395 - 66,826,530 (+)NCBINCBI36Build 36hg18NCBI36
Celera1164,368,966 - 64,402,594 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1163,385,412 - 63,398,589 (+)NCBIHuRef
CHM1_11166,939,770 - 66,952,950 (+)NCBICHM1_1
T2T-CHM13v2.01167,283,279 - 67,296,448 (+)NCBIT2T-CHM13v2.0
Ankrd13d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,320,208 - 4,333,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,320,208 - 4,333,165 (-)EnsemblGRCm39 Ensembl
GRCm38194,270,180 - 4,284,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,270,180 - 4,283,137 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,270,180 - 4,283,137 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,270,180 - 4,283,048 (-)NCBIMGSCv36mm8
Celera194,141,498 - 4,154,283 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.96NCBI
Ankrd13d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,995,012 - 211,007,430 (-)NCBIGRCr8
mRatBN7.21201,565,712 - 201,577,987 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,565,712 - 201,577,933 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,917,795 - 209,930,038 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,011,159 - 217,023,380 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,702,177 - 209,714,398 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,520,316 - 219,532,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,520,075 - 219,532,609 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,390,429 - 226,402,816 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,857,232 - 206,869,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,010,685 - 207,022,929 (-)NCBI
Celera1199,110,028 - 199,122,250 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ankrd13d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,159,337 - 18,170,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,159,337 - 18,170,480 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,135,779 - 50,145,721 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,135,792 - 50,145,846 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,745,902 - 48,755,738 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,084,836 - 51,094,672 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,084,849 - 51,094,874 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,270,748 - 50,280,583 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,845,218 - 49,855,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,639,833 - 50,649,669 (-)NCBIUU_Cfam_GSD_1.0
Ankrd13d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,980,746 - 5,992,176 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,423,048 - 2,434,897 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,423,095 - 2,434,534 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,193,153 - 5,206,993 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,194,010 - 5,207,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,977,077 - 3,990,122 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,960,539 - 6,972,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl16,960,389 - 6,971,727 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,247,206 - 104,260,683 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd13d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,195,828 - 19,209,334 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,195,767 - 19,209,535 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048654   ⟹   ENSPPAP00000025824
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,959,474 - 65,974,193 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048656   ⟹   ENSPPAP00000025826
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,961,201 - 65,974,193 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048658   ⟹   ENSPPAP00000025828
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,961,990 - 65,974,345 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048661   ⟹   ENSPPAP00000025831
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1165,962,485 - 65,974,193 (+)Ensembl
RefSeq Acc Id: XM_034933126   ⟹   XP_034789017
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,516,182 - 68,529,264 (+)NCBI
NHGRI_mPanPan11169,558,747 - 69,571,837 (+)NCBI
Mhudiblu_PPA_v01162,647,682 - 62,660,766 (+)NCBI
RefSeq Acc Id: XM_034933127   ⟹   XP_034789018
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,516,234 - 68,529,264 (+)NCBI
NHGRI_mPanPan11169,558,676 - 69,571,837 (+)NCBI
Mhudiblu_PPA_v01162,647,609 - 62,660,766 (+)NCBI
RefSeq Acc Id: XM_063608607   ⟹   XP_063464677
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2968,516,888 - 68,529,264 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034789017 (Get FASTA)   NCBI Sequence Viewer  
  XP_034789018 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025824.1
  ENSPPAP00000025826.1
  ENSPPAP00000025828.1
  ENSPPAP00000025831.1
Reference Protein Sequences
RefSeq Acc Id: XP_034789018   ⟸   XM_034933127
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034789017   ⟸   XM_034933126
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000025828   ⟸   ENSPPAT00000048658
RefSeq Acc Id: ENSPPAP00000025824   ⟸   ENSPPAT00000048654
RefSeq Acc Id: ENSPPAP00000025826   ⟸   ENSPPAT00000048656
RefSeq Acc Id: ENSPPAP00000025831   ⟸   ENSPPAT00000048661
RefSeq Acc Id: XP_063464677   ⟸   XM_063608607
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048654.1 UniProtKB/TrEMBL
  ENSPPAT00000048656.1 UniProtKB/TrEMBL
  ENSPPAT00000048658.1 UniProtKB/TrEMBL
  ENSPPAT00000048661.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene ANKRD13D ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13D UniProtKB/TrEMBL
  PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A2R9B894_PANPA UniProtKB/TrEMBL
  A0A2R9B8A8_PANPA UniProtKB/TrEMBL
  A0A2R9BC11 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BC16_PANPA UniProtKB/TrEMBL