PEX16 (peroxisomal biogenesis factor 16) - Rat Genome Database

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Gene: PEX16 (peroxisomal biogenesis factor 16) Pan paniscus
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Symbol: PEX16
Name: peroxisomal biogenesis factor 16
RGD ID: 11900148
Description: INVOLVED IN protein import into peroxisome matrix (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN peroxisomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal membrane protein PEX16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,118,114 - 48,127,750 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,125,265 - 48,134,598 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,864,220 - 45,872,263 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,355,950 - 46,364,552 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,355,950 - 46,364,543 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PEX16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,118,114 - 48,127,750 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,125,265 - 48,134,598 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,864,220 - 45,872,263 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,355,950 - 46,364,552 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,355,950 - 46,364,543 (-)Ensemblpanpan1.1panPan2
PEX16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,909,663 - 45,918,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,909,663 - 45,918,812 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,931,214 - 45,939,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,887,796 - 45,896,182 (-)NCBINCBI36Build 36hg18NCBI36
Build 341145,887,796 - 45,896,182NCBI
Celera1146,078,825 - 46,087,276 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1145,638,073 - 45,646,496 (-)NCBIHuRef
CHM1_11145,928,639 - 45,937,093 (-)NCBICHM1_1
T2T-CHM13v2.01146,065,593 - 46,074,744 (-)NCBIT2T-CHM13v2.0
Pex16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39292,205,043 - 92,211,563 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl292,205,021 - 92,211,562 (+)EnsemblGRCm39 Ensembl
GRCm38292,374,676 - 92,381,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl292,374,676 - 92,381,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv37292,214,833 - 92,221,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36292,176,337 - 92,182,056 (+)NCBIMGSCv36mm8
Celera293,767,804 - 93,774,348 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.98NCBI
Pex16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,800,357 - 98,808,091 (+)NCBIGRCr8
mRatBN7.2378,347,212 - 78,352,603 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl378,343,164 - 78,353,207 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx381,823,035 - 81,828,381 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0390,422,076 - 90,427,422 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0388,273,171 - 88,278,517 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0381,283,137 - 81,292,575 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,283,137 - 81,292,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0387,986,605 - 87,996,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,769,618 - 76,779,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1376,666,045 - 76,675,478 (+)NCBI
Celera377,545,160 - 77,554,593 (+)NCBICelera
Cytogenetic Map3q24NCBI
Pex16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554222,055,446 - 2,061,729 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554222,054,867 - 2,060,871 (+)NCBIChiLan1.0ChiLan1.0
PEX16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11843,506,531 - 43,513,735 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1843,507,193 - 43,516,235 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1842,234,570 - 42,241,718 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01844,162,508 - 44,169,656 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1844,163,163 - 44,169,650 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11843,646,760 - 43,653,908 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01843,199,709 - 43,206,857 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,931,997 - 43,939,145 (+)NCBIUU_Cfam_GSD_1.0
Pex16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,991,610 - 20,998,245 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365623,103,349 - 3,109,887 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365623,103,332 - 3,109,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl216,555,051 - 16,561,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1216,555,045 - 16,560,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,952,994 - 17,958,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,424,155 - 19,432,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,423,581 - 19,431,948 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038116,700,492 - 116,709,316 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247672,594,428 - 2,600,191 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247672,589,320 - 2,600,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000062342   ⟹   ENSPPAP00000039431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1146,355,950 - 46,364,543 (-)Ensembl
RefSeq Acc Id: XM_003808237   ⟹   XP_003808285
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2948,118,621 - 48,127,272 (-)NCBI
NHGRI_mPanPan11148,125,494 - 48,134,135 (-)NCBI
Mhudiblu_PPA_v01145,864,320 - 45,872,263 (-)NCBI
PanPan1.11146,355,950 - 46,364,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932456   ⟹   XP_034788347
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2948,118,114 - 48,127,280 (-)NCBI
NHGRI_mPanPan11148,125,265 - 48,134,596 (-)NCBI
Mhudiblu_PPA_v01145,864,220 - 45,872,263 (-)NCBI
RefSeq Acc Id: XM_063608402   ⟹   XP_063464472
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2948,118,621 - 48,127,744 (-)NCBI
RefSeq Acc Id: XM_063608403   ⟹   XP_063464473
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2948,120,510 - 48,127,284 (-)NCBI
RefSeq Acc Id: XM_063608404   ⟹   XP_063464474
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2948,118,621 - 48,127,750 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003808285 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788347 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464474 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039431.1
RefSeq Acc Id: XP_003808285   ⟸   XM_003808237
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CBX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788347   ⟸   XM_034932456
- Peptide Label: isoform X5
Ensembl Acc Id: ENSPPAP00000039431   ⟸   ENSPPAT00000062342
RefSeq Acc Id: XP_063464474   ⟸   XM_063608404
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063464472   ⟸   XM_063608402
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063464473   ⟸   XM_063608403
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062342.1 UniProtKB/TrEMBL
InterPro Pex16 UniProtKB/TrEMBL
KEGG Report pps:100982684 UniProtKB/TrEMBL
NCBI Gene PEX16 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX16 UniProtKB/TrEMBL
  PTHR13299 UniProtKB/TrEMBL
Pfam Pex16 UniProtKB/TrEMBL
UniProt A0A2R9CBX0 ENTREZGENE, UniProtKB/TrEMBL