WNT6 (Wnt family member 6) - Rat Genome Database

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Gene: WNT6 (Wnt family member 6) Pan paniscus
Analyze
Symbol: WNT6
Name: Wnt family member 6
RGD ID: 11899278
Description: ENCODES a protein that exhibits cytokine activity (inferred); frizzled binding (inferred); signaling receptor binding (inferred); INVOLVED IN axis specification (ortholog); branching involved in ureteric bud morphogenesis (ortholog); epithelial-mesenchymal cell signaling (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Animal Mammary Neoplasms (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cell surface (inferred); extracellular matrix (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,492,605 - 121,507,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,507,573 - 121,522,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,119,740 - 106,134,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,714,217 - 224,728,557 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,714,229 - 224,728,171 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WNT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,492,605 - 121,507,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,507,573 - 121,522,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,119,740 - 106,134,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,714,217 - 224,728,557 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,714,229 - 224,728,171 (+)Ensemblpanpan1.1panPan2
WNT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,859,805 - 218,874,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,859,805 - 218,874,233 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,724,528 - 219,738,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,432,790 - 219,447,198 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,550,050 - 219,564,459NCBI
Celera2213,494,308 - 213,508,717 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,579,073 - 211,593,483 (+)NCBIHuRef
CHM1_12219,731,923 - 219,746,333 (+)NCBICHM1_1
T2T-CHM13v2.02219,348,208 - 219,362,636 (+)NCBIT2T-CHM13v2.0
Wnt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,793,499 - 74,824,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,811,051 - 74,824,481 (+)EnsemblGRCm39 Ensembl
GRCm38174,754,342 - 74,785,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,771,892 - 74,785,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,818,466 - 74,831,893 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,705,165 - 74,718,155 (+)NCBIMGSCv36mm8
Celera175,326,979 - 75,340,389 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Wnt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,778,552 - 83,792,186 (+)NCBIGRCr8
mRatBN7.2976,329,882 - 76,343,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,329,882 - 76,343,523 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,775,108 - 84,788,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,904,052 - 89,917,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,290,221 - 88,303,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,033,543 - 82,047,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,033,543 - 82,047,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,796,069 - 81,809,700 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,104,364 - 74,117,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,260,929 - 74,264,251 (+)NCBI
Celera973,902,364 - 73,915,999 (+)NCBICelera
Cytogenetic Map9q33NCBI
Wnt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,545,700 - 14,560,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,547,427 - 14,560,001 (-)NCBIChiLan1.0ChiLan1.0
WNT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,452,875 - 25,457,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,453,905 - 25,456,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,264,174 - 26,277,672 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,459,418 - 25,472,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,459,276 - 25,472,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,364,055 - 25,377,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,298,852 - 25,312,297 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,319,631 - 25,333,316 (+)NCBIUU_Cfam_GSD_1.0
Wnt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,947,277 - 174,959,904 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,290,052 - 1,302,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,290,061 - 1,302,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,901,376 - 120,917,486 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,901,471 - 120,917,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WNT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,759,794 - 104,775,642 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,760,045 - 104,774,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,626,733 - 94,641,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,145,545 - 6,150,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,145,836 - 6,150,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034955175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000011030   ⟹   ENSPPAP00000002246
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,714,229 - 224,728,171 (+)Ensembl
RefSeq Acc Id: XM_034955175   ⟹   XP_034811066
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,492,605 - 121,507,593 (+)NCBI
NHGRI_mPanPan12B121,507,573 - 121,522,558 (+)NCBI
Mhudiblu_PPA_v02B106,119,740 - 106,134,317 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034811066 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002246.1
RefSeq Acc Id: XP_034811066   ⟸   XM_034955175
- UniProtKB: A0A2R8ZF32 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000002246   ⟸   ENSPPAT00000011030


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000010119 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000011030.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Wnt UniProtKB/TrEMBL
  Wnt6 UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
NCBI Gene WNT6 ENTREZGENE
PANTHER PROTEIN WNT-6 UniProtKB/TrEMBL
  PTHR12027 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNT6PROTEIN UniProtKB/TrEMBL
  WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A2R8ZF32 ENTREZGENE, UniProtKB/TrEMBL