LOC100971082 (sororin) - Rat Genome Database

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Gene: LOC100971082 (sororin) Pan paniscus
Analyze
Symbol: LOC100971082 (Ensembl: CDCA5)
Name: sororin (Ensembl:cell division cycle associated 5)
RGD ID: 11897634
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN cell division (inferred); double-strand break repair (inferred); mitotic cell cycle (inferred); FOUND IN chromatin (inferred); chromosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDCA5; cell division cycle associated 5
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,304,290 - 66,311,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,347,251 - 67,354,085 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,433,784 - 60,440,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,772,458 - 63,779,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,772,458 - 63,779,154 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
chromosome  (IEA)
cytoplasm  (IEA)
membrane  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003828602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000030687   ⟹   ENSPPAP00000008053
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1163,772,458 - 63,779,154 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000030691   ⟹   ENSPPAP00000008057
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1163,774,103 - 63,778,987 (-)Ensembl
RefSeq Acc Id: XM_003828602   ⟹   XP_003828650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,304,290 - 66,311,125 (-)NCBI
NHGRI_mPanPan11167,347,251 - 67,354,085 (-)NCBI
Mhudiblu_PPA_v01160,433,784 - 60,440,620 (-)NCBI
PanPan1.11163,772,458 - 63,779,154 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828650 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008053.1
  ENSPPAP00000008057.1
Reference Protein Sequences
RefSeq Acc Id: XP_003828650   ⟸   XM_003828602
- UniProtKB: A0A2R8ZSV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000008057   ⟸   ENSPPAT00000030691
RefSeq Acc Id: ENSPPAP00000008053   ⟸   ENSPPAT00000030687


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030687.1 UniProtKB/TrEMBL
  ENSPPAT00000030691.1 UniProtKB/TrEMBL
InterPro Sororin UniProtKB/TrEMBL
KEGG Report pps:100971082 UniProtKB/TrEMBL
NCBI Gene LOC100971082 ENTREZGENE
PANTHER PTHR31092 UniProtKB/TrEMBL
  SORORIN UniProtKB/TrEMBL
Pfam Sororin UniProtKB/TrEMBL
UniProt A0A2R8ZSV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZYN5_PANPA UniProtKB/TrEMBL