LOC100981170 (olfactory receptor 13J1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC100981170 (olfactory receptor 13J1) Pan paniscus
Analyze
Symbol: LOC100981170
Name: olfactory receptor 13J1
RGD ID: 11897159
Description: ASSOCIATED WITH Anauxetic Dysplasia (ortholog); distal spinal muscular atrophy 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1936,522,294 - 36,523,368 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0935,718,990 - 35,722,649 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LOC100981170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1936,522,294 - 36,523,368 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0935,718,990 - 35,722,649 (-)NCBIMhudiblu_PPA_v0panPan3
OR13J1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl935,869,263 - 35,870,601 (-)EnsemblGRCh38hg38GRCh38
GRCh38935,869,463 - 35,870,401 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37935,869,460 - 35,870,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,859,460 - 35,860,398 (-)NCBINCBI36hg18NCBI36
Build 34935,859,459 - 35,860,398NCBI
Celera935,803,004 - 35,803,942 (-)NCBI
Cytogenetic Map9p13.3NCBI
HuRef935,825,475 - 35,826,413 (-)NCBIHuRef
CHM1_1935,869,858 - 35,870,796 (-)NCBICHM1_1
Olfr71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,705,628 - 43,706,566 (-)NCBIGRCm39mm39
GRCm39 Ensembl443,704,562 - 43,710,255 (-)Ensembl
GRCm38443,705,628 - 43,706,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,704,562 - 43,710,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv37443,718,500 - 43,719,438 (-)NCBIGRCm37mm9NCBIm37
MGSCv36443,726,728 - 43,727,666 (-)NCBImm8
Celera443,740,155 - 43,741,093 (-)NCBICelera
Cytogenetic Map4A5NCBI
Olr834
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2557,961,391 - 57,962,329 (-)NCBI
Rnor_6.0 Ensembl559,207,120 - 59,208,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0559,207,120 - 59,208,058 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0563,731,910 - 63,732,848 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4560,190,632 - 60,191,570 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1560,190,810 - 60,191,749 (-)NCBI
Celera556,541,849 - 56,542,787 (-)NCBICelera
Cytogenetic Map5q22NCBI
LOC102009376
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472452,944 - 453,879 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955472452,846 - 454,056 (+)NCBIChiLan1.0ChiLan1.0
OR13J1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,399,129 - 52,400,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,399,129 - 52,400,067 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,966,700 - 50,967,659 (-)NCBI
ROS_Cfam_1.01153,464,128 - 53,465,087 (-)NCBI
UMICH_Zoey_3.11152,008,633 - 52,009,592 (-)NCBI
UNSW_CanFamBas_1.01151,993,056 - 51,994,015 (-)NCBI
UU_Cfam_GSD_1.01152,694,338 - 52,695,297 (-)NCBI
LOC100157239
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11236,595,655 - 236,597,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,320,990 - 264,322,710 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219206
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,734,172 - 44,735,627 (+)NCBI
ChlSab1.1 Ensembl1244,734,504 - 44,735,442 (+)Ensembl
LOC101712037
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248684,910,350 - 4,911,288 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034967410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034967410   ⟹   XP_034823301
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0935,718,990 - 35,722,649 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034823301 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034823301   ⟸   XM_034967410


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100981170 ENTREZGENE