LOC100989331 (histone H2B type 1-M) - Rat Genome Database

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Gene: LOC100989331 (histone H2B type 1-M) Pan paniscus
Analyze
Symbol: LOC100989331 (Ensembl: H2BC14)
Name: histone H2B type 1-M (Ensembl:H2B clustered histone 14)
RGD ID: 11895284
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,460,979 - 42,462,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,461,992 - 38,463,610 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,647,773 - 27,648,522 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,322,119 - 28,322,696 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,322,145 - 28,322,525 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003829693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000028305   ⟹   ENSPPAP00000006705
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl628,322,145 - 28,322,525 (+)Ensembl
RefSeq Acc Id: XM_003829693   ⟹   XP_003829741
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,460,979 - 42,462,522 (+)NCBI
NHGRI_mPanPan1638,461,992 - 38,463,610 (+)NCBI
Mhudiblu_PPA_v0627,647,773 - 27,648,522 (+)NCBI
PanPan1.1628,322,119 - 28,322,696 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829741 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006705
  ENSPPAP00000006705.1
  ENSPPAP00000020457.1
Reference Protein Sequences
RefSeq Acc Id: XP_003829741   ⟸   XM_003829693
- UniProtKB: A0A2R8ZP44 (UniProtKB/TrEMBL),   A0A2R9AT01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000006705   ⟸   ENSPPAT00000028305
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025539 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000033386 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028305.1 UniProtKB/TrEMBL
  ENSPPAT00000043251.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report pps:100989331 UniProtKB/TrEMBL
NCBI Gene LOC100989331 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  HISTONE H2B TYPE 1-M UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A2R8ZP44 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AT01 ENTREZGENE, UniProtKB/TrEMBL