TMEM150B (transmembrane protein 150B)

Gene: TMEM150B (transmembrane protein 150B) Pan paniscus

Analyze

Symbol:

TMEM150B

Name:

transmembrane protein 150B

RGD ID:

11893248

Description:

ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); FOUND IN autophagosome membrane (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

modulator of macroautophagy TMEM150B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	61,450,323 - 61,458,984 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	63,179,474 - 63,188,135 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	52,354,820 - 52,367,960 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	61,046,319 - 61,057,855 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	61,046,319 - 61,057,855 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

autophagosome membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TMEM150B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	61,450,323 - 61,458,984 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	63,179,474 - 63,188,135 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	52,354,820 - 52,367,960 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	61,046,319 - 61,057,855 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	61,046,319 - 61,057,855 (-)	Ensembl	panpan1.1		panPan2

TMEM150B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	55,309,444 - 55,325,341 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	55,312,801 - 55,334,048 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	55,824,169 - 55,836,709 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	60,516,039 - 60,528,520 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	52,865,217 - 52,877,710 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	52,146,237 - 52,159,045 (-)	NCBI		HuRef
CHM1_1	19	55,818,054 - 55,830,546 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	58,404,966 - 58,429,532 (-)	NCBI		T2T-CHM13v2.0

Tmem150b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,709,831 - 4,728,250 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	4,709,831 - 4,728,248 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	4,706,832 - 4,725,251 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,706,832 - 4,725,249 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	4,658,434 - 4,676,853 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	4,309,919 - 4,328,338 (-)	NCBI		MGSCv36	mm8
Celera	7	4,436,858 - 4,455,577 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.72	NCBI

Tmem150b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	78,153,729 - 78,164,149 (+)	NCBI		GRCr8
mRatBN7.2	1	69,124,943 - 69,134,617 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	69,125,710 - 69,141,034 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	74,470,744 - 74,479,647 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	83,035,046 - 83,043,948 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	76,187,560 - 76,196,429 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	72,692,089 - 72,701,732 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	72,692,105 - 72,701,593 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	75,833,876 - 75,843,513 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	67,842,171 - 67,851,072 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	67,920,576 - 67,928,528 (+)	NCBI
Celera	1	67,989,954 - 67,998,845 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

Tmem150b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955567	918,585 - 924,749 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955567	918,583 - 924,749 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM150B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	102,359,774 - 102,368,775 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	102,360,126 - 102,368,471 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	102,405,856 - 102,425,486 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	103,002,352 - 103,021,980 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	103,013,148 - 103,021,966 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	102,639,591 - 102,659,215 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	102,351,735 - 102,370,972 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	103,114,902 - 103,134,541 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem150b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	1,985,431 - 1,991,909 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936886	562,614 - 571,544 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936886	567,304 - 574,010 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM150B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	59,498,753 - 59,505,910 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	59,498,752 - 59,506,167 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM150B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	47,915,372 - 47,929,885 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	47,911,359 - 47,922,094 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	548,979 - 557,805 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem150b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	1,970,662 - 1,980,405 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	1,969,312 - 1,975,714 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003807106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034946837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000058217 ⟹ ENSPPAP00000035329

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	61,046,319 - 61,057,855 (-)	Ensembl

RefSeq Acc Id:

XM_003807106 ⟹ XP_003807154

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	61,450,323 - 61,458,984 (-)	NCBI
NHGRI_mPanPan1	19	63,179,474 - 63,188,135 (-)	NCBI
Mhudiblu_PPA_v0	19	52,354,820 - 52,367,960 (-)	NCBI
PanPan1.1	19	61,046,319 - 61,057,855 (-)	NCBI

Sequence:

show sequence

AGCCAGGCCAGCAGCCCTAGCTTCTGGAAGGATCCTTCAGGCTCCAGACACCCAACCTACCCGT
GGCCGGATGTCTGCCTGAGCCCCACCCCGAATGCCAGCCCTTCTTCCCTGAGCTCACCCAGCCC
CAGCTCCAGGACTGAGAGCCCCAGGAAGCTTGGAGAGAGCCCGGCATGTGGGGCTACCTGTCGC
TGATGCCTGTCTTCCTAGCTGTCTGGGCTATCTCTGGCGTCTGGATCGTTTTTGCCATTGCAGT
GACCAACAGGACTGTGGACCTCAGTAAAGGCTTTCCCTACATCAGCATCTGCGGATCCTTCCCC
CCTCAGAGCTGCATCTTCAGCCAGGTGCTCAATATGGGAGCCGCTCTGGCTGCGTGGATCTGCA
TTGTCCGTTACCACCAGCTCCGGGACTGGGGCGTCGGAAGGTGGCCTAACCAGCTGATCCTATG
GACGGGTCTTCTCTGTGCCCTGGGCACCTCCGTGGTAGGCAATTTCCAGGAAAAGAACCAGCGG
CCTACGCACTTGGCAGGGGCCTTCCTTGCCTTCATCTTGGGTAACGTCTACTTCTGGCTGCAGC
TCCTCCTGTGGAGGCTGAAGAGGCTGCCCCAGCCCGGGGCTGCCTGGATTGGGCCACTCCGCCT
GGGCCTCTGCAGCGTCTGCACCATCCTCATTGTGGCCATGATCGTCCTCCACGCCTGCTCGCTG
CGTAGCGTCTCTGCGGCCTGCGAGTGGGTCGTGGCCATGCTGCTGTTCGCGCTCTTCGGTCTCT
TCGCCGTTGACTTCTCCGCCCTGGAGAGCTGCACCCTGTGTGTTCAGCCGTGGCCCAGCCTCAG
CCCCCCGCCAGCCTCCCCCATCTCCCTGCCGGTCCAGCTGTAGCAGGCACCCTGACCCGGGCCT
TGCCCTCACCAGTGAAGCAGGAAAGATGGGGCCAATCCCAGTGCCCCGCACCCAGCAAGATGAG
CCGCTGGGGATCTCTCCAACCAGCTGGGGCTGCCGCTGACTGACCTGTAGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003807154	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000035329
	ENSPPAP00000035329.1

RefSeq Acc Id:

XP_003807154 ⟸ XM_003807106

- UniProtKB:

A0A2R9CAD4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWGYLSLMPVFLAVWAISGVWIVFAIAVTNRTVDLSKGFPYISICGSFPPQSCIFSQVLNMGAA
LAAWICIVRYHQLRDWGVGRWPNQLILWTGLLCALGTSVVGNFQEKNQRPTHLAGAFLAFILGN
VYFWLQLLLWRLKRLPQPGAAWIGPLRLGLCSVCTILIVAMIVLHACSLRSVSAACEWVVAMLL
FALFGLFAVDFSALESCTLCVQPWPSLSPPPASPISLPVQL

hide sequence

RefSeq Acc Id:

ENSPPAP00000035329 ⟸ ENSPPAT00000058217

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040488	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000058217.1	UniProtKB/TrEMBL
InterPro	Frag1/DRAM/Sfk1	UniProtKB/TrEMBL
KEGG Report	pps:100984715	UniProtKB/TrEMBL
NCBI Gene	TMEM150B	ENTREZGENE
PANTHER	FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED	UniProtKB/TrEMBL
	MODULATOR OF MACROAUTOPHAGY TMEM150B	UniProtKB/TrEMBL
Pfam	Frag1	UniProtKB/TrEMBL
UniProt	A0A2R9CAD4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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