SLC43A1 (solute carrier family 43 member 1) - Rat Genome Database
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Gene: SLC43A1 (solute carrier family 43 member 1) Pan paniscus
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Symbol: SLC43A1
Name: solute carrier family 43 member 1
RGD ID: 11891750
Description: ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); neutral amino acid transmembrane transporter activity (ortholog); INVOLVED IN L-amino acid transport (ortholog); negative regulation of amino acid transport (ortholog); negative regulation of leucine import (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: large neutral amino acids transporter small subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11156,197,977 - 56,228,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,197,977 - 56,228,565 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01152,725,502 - 52,757,273 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
SLC43A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11156,197,977 - 56,228,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,197,977 - 56,228,565 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01152,725,502 - 52,757,273 (-)NCBIMhudiblu_PPA_v0panPan3
SLC43A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1157,484,534 - 57,515,780 (-)EnsemblGRCh38hg38GRCh38
GRCh381157,484,531 - 57,516,561 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371157,252,004 - 57,283,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,008,583 - 57,039,735 (-)NCBINCBI36hg18NCBI36
Build 341157,008,583 - 57,039,735NCBI
Celera1154,608,562 - 54,639,686 (-)NCBI
Cytogenetic Map11q12.1ENTREZGENE
HuRef1153,600,856 - 53,631,981 (-)NCBIHuRef
CHM1_11157,118,296 - 57,149,440 (-)NCBICHM1_1
Slc43a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,669,196 - 84,693,930 (+)NCBIGRCm39mm39
GRCm38284,838,855 - 84,863,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,838,850 - 84,863,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,679,565 - 84,703,743 (+)NCBIGRCm37mm9NCBIm37
MGSCv36284,639,689 - 84,664,433 (+)NCBImm8
Celera286,437,558 - 86,461,734 (+)NCBICelera
Cytogenetic Map2DNCBI
Slc43a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0372,238,796 - 72,265,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,238,981 - 72,264,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,760,039 - 78,784,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,049,296 - 68,090,034 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1367,946,913 - 67,986,407 (+)NCBI
Celera369,275,546 - 69,301,624 (+)NCBICelera
Cytogenetic Map3q24NCBI
Slc43a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,472,716 - 2,490,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,474,173 - 2,490,508 (-)NCBIChiLan1.0ChiLan1.0
SLC43A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1838,653,036 - 38,674,513 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11838,652,961 - 38,675,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc43a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365814,986,034 - 5,009,892 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC43A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,406,941 - 13,436,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,407,046 - 13,436,270 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC43A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,716,708 - 15,750,453 (+)NCBI
Slc43a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248643,137,663 - 3,174,793 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000006259   ⟹   ENSPPAP00000001327
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1156,197,977 - 56,228,565 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000006316   ⟹   ENSPPAP00000001334
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1156,198,549 - 56,226,940 (-)Ensembl
RefSeq Acc Id: XM_003826432   ⟹   XP_003826480
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11156,197,977 - 56,227,710 (-)NCBI
Mhudiblu_PPA_v01152,725,502 - 52,755,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003826433   ⟹   XP_003826481
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11156,197,977 - 56,228,610 (-)NCBI
Mhudiblu_PPA_v01152,725,502 - 52,757,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008951837   ⟹   XP_008950085
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11156,198,435 - 56,227,472 (-)NCBI
Mhudiblu_PPA_v01152,725,502 - 52,755,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014346836   ⟹   XP_014202322
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11156,197,977 - 56,228,565 (-)NCBI
Mhudiblu_PPA_v01152,725,502 - 52,756,541 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932644   ⟹   XP_034788535
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01152,725,502 - 52,756,210 (-)NCBI
RefSeq Acc Id: XM_034932646   ⟹   XP_034788537
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01152,725,502 - 52,756,210 (-)NCBI
RefSeq Acc Id: XM_034932647   ⟹   XP_034788538
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01152,726,112 - 52,756,187 (-)NCBI
RefSeq Acc Id: XM_034932648   ⟹   XP_034788539
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01152,725,502 - 52,755,050 (-)NCBI
RefSeq Acc Id: XM_034932649   ⟹   XP_034788540
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01152,725,502 - 52,756,187 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003826481   ⟸   XM_003826433
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_014202322   ⟸   XM_014346836
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003826480   ⟸   XM_003826432
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008950085   ⟸   XM_008951837
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034788537   ⟸   XM_034932646
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034788535   ⟸   XM_034932644
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034788540   ⟸   XM_034932649
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034788539   ⟸   XM_034932648
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034788538   ⟸   XM_034932647
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000001327   ⟸   ENSPPAT00000006259
RefSeq Acc Id: ENSPPAP00000001334   ⟸   ENSPPAT00000006316


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005364 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000001327 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000001334 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000006259 UniProtKB/TrEMBL
  ENSPPAT00000006316 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report pps:100968999 UniProtKB/TrEMBL
NCBI Gene SLC43A1 ENTREZGENE
Pfam MFS_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A2R8Z8S1_PANPA UniProtKB/TrEMBL
  A0A2R8ZFD1_PANPA UniProtKB/TrEMBL