ASPM (assembly factor for spindle microtubules) - Rat Genome Database

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Gene: ASPM (assembly factor for spindle microtubules) Pan paniscus
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Symbol: ASPM
Name: assembly factor for spindle microtubules
RGD ID: 11891432
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN asymmetric cell division (ortholog); brain development (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); COVID-19 (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN apical plasma membrane (ortholog); centrosome (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: abnormal spindle microtubule assembly; abnormal spindle-like microcephaly-associated protein homolog; asp (abnormal spindle) homolog, microcephaly associated
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2152,234,381 - 52,296,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1152,203,536 - 52,265,974 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,674,890 - 172,737,426 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,988,297 - 177,050,810 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,988,297 - 177,050,810 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ASPM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2152,234,381 - 52,296,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1152,203,536 - 52,265,974 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,674,890 - 172,737,426 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,988,297 - 177,050,810 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,988,297 - 177,050,810 (-)Ensemblpanpan1.1panPan2
ASPM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381197,084,127 - 197,146,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1197,084,121 - 197,146,694 (-)EnsemblGRCh38hg38GRCh38
GRCh371197,053,257 - 197,115,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,319,997 - 195,382,287 (-)NCBINCBI36Build 36hg18NCBI36
Build 341193,785,110 - 193,847,224NCBI
Celera1170,178,726 - 170,241,291 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1168,210,775 - 168,273,332 (-)NCBIHuRef
CHM1_11198,475,715 - 198,538,290 (-)NCBICHM1_1
T2T-CHM13v2.01196,345,951 - 196,408,493 (-)NCBIT2T-CHM13v2.0
Aspm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391139,381,450 - 139,421,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1139,382,510 - 139,421,829 (+)EnsemblGRCm39 Ensembl
GRCm381139,454,188 - 139,494,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1139,454,772 - 139,494,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371141,351,350 - 141,390,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,271,184 - 141,310,501 (+)NCBIMGSCv36mm8
Celera1142,091,996 - 142,131,299 (+)NCBICelera
Cytogenetic Map1FNCBI
cM Map161.45NCBI
Aspm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,625,584 - 53,674,489 (+)NCBIGRCr8
mRatBN7.21351,074,849 - 51,123,755 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,074,849 - 51,123,755 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1353,674,430 - 53,723,339 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01354,962,363 - 55,011,271 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,237,670 - 52,286,704 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01356,546,021 - 56,591,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,546,021 - 56,591,793 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01361,564,059 - 61,609,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41352,811,658 - 52,860,925 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11352,825,867 - 52,874,707 (+)NCBI
Celera1351,338,709 - 51,386,444 (+)NCBICelera
Cytogenetic Map13q13NCBI
Aspm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540633,661,322 - 33,720,259 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540633,665,675 - 33,720,468 (-)NCBIChiLan1.0ChiLan1.0
ASPM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.175,591,530 - 5,663,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl75,590,957 - 5,660,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,214,490 - 5,283,621 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,281,249 - 5,357,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,281,133 - 5,357,008 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,223,076 - 5,291,758 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,324,076 - 5,392,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,356,703 - 5,425,864 (+)NCBIUU_Cfam_GSD_1.0
Aspm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934477,418,215 - 77,467,185 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365676,653,728 - 6,701,752 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365676,653,382 - 6,701,856 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASPM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1019,975,192 - 20,039,623 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11019,971,516 - 20,039,680 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21024,612,797 - 24,657,404 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASPM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12532,269,518 - 32,334,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2532,281,424 - 32,334,977 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605533,177,890 - 33,242,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aspm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247983,165,393 - 3,225,181 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247983,164,145 - 3,223,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000062680   ⟹   ENSPPAP00000039768
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,297 - 177,050,810 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062682   ⟹   ENSPPAP00000039770
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,297 - 177,050,810 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062699   ⟹   ENSPPAP00000039787
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,494 - 177,050,553 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062706   ⟹   ENSPPAP00000039794
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,494 - 177,050,553 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062711   ⟹   ENSPPAP00000039799
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,494 - 177,050,553 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062721   ⟹   ENSPPAP00000039809
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,988,494 - 177,048,256 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062739   ⟹   ENSPPAP00000039827
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1176,992,369 - 177,050,553 (-)Ensembl
RefSeq Acc Id: XM_003823078   ⟹   XP_003823126
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2152,234,381 - 52,296,951 (+)NCBI
NHGRI_mPanPan1152,203,536 - 52,265,974 (+)NCBI
Mhudiblu_PPA_v01172,674,890 - 172,737,426 (-)NCBI
PanPan1.11176,988,297 - 177,050,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008976677   ⟹   XP_008974925
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2152,234,436 - 52,296,951 (+)NCBI
NHGRI_mPanPan1152,203,546 - 52,265,974 (+)NCBI
Mhudiblu_PPA_v01172,674,890 - 172,737,426 (-)NCBI
PanPan1.11176,988,297 - 177,050,810 (-)NCBI
Sequence:
RefSeq Acc Id: XP_008974925   ⟸   XM_008976677
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CCV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003823126   ⟸   XM_003823078
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000039787   ⟸   ENSPPAT00000062699
RefSeq Acc Id: ENSPPAP00000039768   ⟸   ENSPPAT00000062680
RefSeq Acc Id: ENSPPAP00000039770   ⟸   ENSPPAT00000062682
RefSeq Acc Id: ENSPPAP00000039827   ⟸   ENSPPAT00000062739
RefSeq Acc Id: ENSPPAP00000039794   ⟸   ENSPPAT00000062706
RefSeq Acc Id: ENSPPAP00000039799   ⟸   ENSPPAT00000062711
RefSeq Acc Id: ENSPPAP00000039809   ⟸   ENSPPAT00000062721

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042492 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062680.1 UniProtKB/TrEMBL
  ENSPPAT00000062682.1 UniProtKB/TrEMBL
  ENSPPAT00000062699.1 UniProtKB/TrEMBL
  ENSPPAT00000062706.1 UniProtKB/TrEMBL
  ENSPPAT00000062711.1 UniProtKB/TrEMBL
  ENSPPAT00000062721.1 UniProtKB/TrEMBL
  ENSPPAT00000062739.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  ASH UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report pps:100995785 UniProtKB/TrEMBL
NCBI Gene ASPM ENTREZGENE
PANTHER SPERMATOGENESIS-ASSOCIATED PROTEIN 17 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam ASH UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  PF00612 UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9CCV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CD45_PANPA UniProtKB/TrEMBL
  A0A2R9CD51_PANPA UniProtKB/TrEMBL
  A0A2R9CD59_PANPA UniProtKB/TrEMBL
  A0A2R9CFH3_PANPA UniProtKB/TrEMBL
  A0A2R9CNH6_PANPA UniProtKB/TrEMBL
  A0A2R9CNK2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-25 ASPM  assembly factor for spindle microtubules  ASPM  abnormal spindle microtubule assembly  Symbol and/or name change 5135510 APPROVED