SLC24A2 (solute carrier family 24 member 2) - Rat Genome Database

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Gene: SLC24A2 (solute carrier family 24 member 2) Pan paniscus
Analyze
Symbol: SLC24A2
Name: solute carrier family 24 member 2
RGD ID: 11891354
Description: ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100994019; sodium/potassium/calcium exchanger 2; sodium/potassium/calcium exchanger 2 pseudogene
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211104,762,654 - 105,039,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19104,768,598 - 105,044,955 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0919,317,132 - 19,593,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1919,808,591 - 20,251,387 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl919,814,244 - 20,249,225 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC24A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211104,762,654 - 105,039,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19104,768,598 - 105,044,955 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0919,317,132 - 19,593,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1919,808,591 - 20,251,387 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl919,814,244 - 20,249,225 (-)Ensemblpanpan1.1panPan2
SLC24A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38919,507,455 - 20,307,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl919,507,452 - 19,789,037 (-)EnsemblGRCh38hg38GRCh38
GRCh37919,507,453 - 19,789,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36919,505,978 - 19,776,926 (-)NCBINCBI36Build 36hg18NCBI36
Build 34919,505,977 - 19,776,926NCBI
Celera919,433,508 - 19,714,554 (-)NCBICelera
Cytogenetic Map9p22.1-p21.3NCBI
HuRef919,468,902 - 19,749,276 (-)NCBIHuRef
CHM1_1919,507,294 - 19,786,814 (-)NCBICHM1_1
T2T-CHM13v2.0919,520,160 - 20,321,675 (-)NCBIT2T-CHM13v2.0
Slc24a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39486,901,361 - 87,148,780 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl486,901,361 - 87,148,714 (-)EnsemblGRCm39 Ensembl
GRCm38486,983,124 - 87,230,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl486,983,124 - 87,230,477 (-)EnsemblGRCm38mm10GRCm38
MGSCv37486,629,028 - 86,876,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36486,461,003 - 86,701,654 (-)NCBIMGSCv36mm8
Celera485,505,583 - 85,755,220 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map440.69NCBI
Slc24a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85106,543,867 - 106,787,810 (-)NCBIGRCr8
mRatBN7.25101,497,916 - 101,741,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5101,502,278 - 101,739,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5103,875,413 - 104,113,006 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05105,665,961 - 105,903,464 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05105,699,555 - 105,944,125 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05105,336,287 - 105,579,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5105,336,262 - 105,582,375 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05109,323,070 - 109,564,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45106,295,254 - 106,537,714 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15106,300,479 - 106,542,940 (-)NCBI
Celera5101,349,538 - 101,587,410 (+)NCBICelera
Cytogenetic Map5q32NCBI
Slc24a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543421,873,091 - 22,091,177 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543421,871,319 - 22,091,125 (-)NCBIChiLan1.0ChiLan1.0
SLC24A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11139,273,285 - 39,521,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1139,278,370 - 39,519,222 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1137,927,494 - 38,178,882 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01140,203,164 - 40,454,628 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1140,209,212 - 40,454,579 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11138,895,568 - 39,147,258 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01138,693,264 - 38,938,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01139,327,164 - 39,578,919 (-)NCBIUU_Cfam_GSD_1.0
Slc24a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947153,700,301 - 153,916,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366521,378,045 - 1,583,403 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366521,375,292 - 1,585,718 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC24A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1203,059,588 - 203,333,781 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11203,059,563 - 203,336,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,912,944 - 226,979,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21226,645,477 - 226,845,623 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC24A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11259,962,744 - 60,229,539 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1259,964,749 - 60,224,816 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603848,071,391 - 48,345,344 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc24a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473623,496,268 - 23,733,259 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473623,488,228 - 23,735,657 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000014817   ⟹   ENSPPAP00000003202
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl919,814,244 - 20,249,225 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000014825   ⟹   ENSPPAP00000003203
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl919,819,095 - 20,249,225 (-)Ensembl
RefSeq Acc Id: XM_024930150   ⟹   XP_024785918
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211104,762,654 - 105,039,010 (+)NCBI
NHGRI_mPanPan19104,768,598 - 105,044,955 (+)NCBI
Mhudiblu_PPA_v0919,317,132 - 19,593,503 (-)NCBI
PanPan1.1919,808,591 - 20,251,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930151   ⟹   XP_024785919
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211104,762,804 - 105,039,010 (+)NCBI
NHGRI_mPanPan19104,768,746 - 105,044,955 (+)NCBI
Mhudiblu_PPA_v0919,325,633 - 19,593,354 (-)NCBI
PanPan1.1919,808,591 - 20,251,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930152   ⟹   XP_024785920
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211104,762,654 - 105,039,010 (+)NCBI
NHGRI_mPanPan19104,768,598 - 105,044,955 (+)NCBI
Mhudiblu_PPA_v0919,317,132 - 19,593,503 (-)NCBI
PanPan1.1919,808,591 - 20,251,387 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024785918 (Get FASTA)   NCBI Sequence Viewer  
  XP_024785919 (Get FASTA)   NCBI Sequence Viewer  
  XP_024785920 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003202
  ENSPPAP00000003202.1
  ENSPPAP00000003203
  ENSPPAP00000003203.1
RefSeq Acc Id: XP_024785920   ⟸   XM_024930152
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZEB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024785918   ⟸   XM_024930150
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZDT5 (UniProtKB/TrEMBL),   A0A2R8ZEB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024785919   ⟸   XM_024930151
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZDT5 (UniProtKB/TrEMBL),   A0A2R8ZEB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000003203   ⟸   ENSPPAT00000014825
RefSeq Acc Id: ENSPPAP00000003202   ⟸   ENSPPAT00000014817

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000013510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000014817.1 UniProtKB/TrEMBL
  ENSPPAT00000014825.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1420.30 UniProtKB/TrEMBL
InterPro K/Na/Ca-exchanger UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC24A2 ENTREZGENE
PANTHER PTHR10846 UniProtKB/TrEMBL
  PTHR10846:SF41 UniProtKB/TrEMBL
Pfam Na_Ca_ex UniProtKB/TrEMBL
UniProt A0A2R8ZDT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZEB1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SLC24A2  solute carrier family 24 member 2  LOC100994019  sodium/potassium/calcium exchanger 2 pseudogene  Data merged from RGD:12035092 737654 PROVISIONAL