CLHC1 (clathrin heavy chain linker domain containing 1) - Rat Genome Database

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Gene: CLHC1 (clathrin heavy chain linker domain containing 1) Pan paniscus
Analyze
Symbol: CLHC1
Name: clathrin heavy chain linker domain containing 1
RGD ID: 11890752
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: clathrin heavy chain linker domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21271,093,739 - 71,155,256 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A71,097,691 - 71,159,208 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,329,248 - 55,389,678 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,470,045 - 56,530,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,470,051 - 56,530,297 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CLHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21271,093,739 - 71,155,256 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A71,097,691 - 71,159,208 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,329,248 - 55,389,678 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,470,045 - 56,530,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,470,051 - 56,530,297 (-)Ensemblpanpan1.1panPan2
CLHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,172,547 - 55,232,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,172,547 - 55,232,563 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,399,683 - 55,459,699 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,256,289 - 55,312,953 (-)NCBINCBI36Build 36hg18NCBI36
Celera255,240,204 - 55,300,225 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,134,728 - 55,194,454 (-)NCBIHuRef
CHM1_1255,329,751 - 55,389,756 (-)NCBICHM1_1
T2T-CHM13v2.0255,169,784 - 55,229,793 (-)NCBIT2T-CHM13v2.0
Clhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,497,950 - 29,528,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,497,950 - 29,528,367 (+)EnsemblGRCm39 Ensembl
GRCm381129,547,950 - 29,578,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,547,950 - 29,578,367 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,447,950 - 29,478,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,447,950 - 29,478,350 (+)NCBIMGSCv36mm8
Celera1131,909,229 - 31,939,356 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.79NCBI
Clhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,488,983 - 107,529,667 (+)NCBIGRCr8
mRatBN7.214103,288,116 - 103,328,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,288,134 - 103,328,715 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14107,627,645 - 107,668,648 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,861,138 - 108,901,939 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014105,333,567 - 105,374,368 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,968,563 - 114,008,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,968,563 - 114,008,000 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,634,925 - 113,673,634 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,561,609 - 110,602,190 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,587,955 - 110,628,536 (+)NCBI
Celera14102,164,678 - 102,205,291 (+)NCBICelera
Cytogenetic Map14q22NCBI
Clhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,843,235 - 27,921,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,825,865 - 27,923,223 (+)NCBIChiLan1.0ChiLan1.0
CLHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,100,740 - 56,132,848 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,100,753 - 56,133,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,057,467 - 56,089,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,104,780 - 57,136,902 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,104,793 - 57,136,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,806,279 - 56,838,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,084,577 - 57,117,306 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,375,692 - 57,407,787 (-)NCBIUU_Cfam_GSD_1.0
Clhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,941,165 - 26,981,157 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,596,051 - 1,623,183 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,595,917 - 1,630,077 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,992,634 - 86,046,908 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,992,307 - 86,046,910 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,776,515 - 90,831,108 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,667,176 - 51,731,969 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,677,094 - 51,732,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604559,984,461 - 60,052,664 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clhc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248336,311,877 - 6,375,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000031757   ⟹   ENSPPAP00000009117
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A56,470,051 - 56,530,297 (-)Ensembl
RefSeq Acc Id: XM_008956256   ⟹   XP_008954504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,969 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,931 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,389,463 (-)NCBI
PanPan1.12A56,470,045 - 56,530,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956257   ⟹   XP_008954505
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,845 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,797 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,389,578 (-)NCBI
PanPan1.12A56,470,045 - 56,530,219 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956258   ⟹   XP_008954506
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,739 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,691 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,389,678 (-)NCBI
PanPan1.12A56,470,045 - 56,530,311 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956259   ⟹   XP_008954507
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,979 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,931 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,389,459 (-)NCBI
PanPan1.12A56,470,045 - 56,530,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014343832   ⟹   XP_014199318
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,764 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,716 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,389,644 (-)NCBI
PanPan1.12A56,470,045 - 56,530,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034953167   ⟹   XP_034809058
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,103,782 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,107,734 - 71,159,208 (+)NCBI
Mhudiblu_PPA_v02A55,329,248 - 55,379,696 (-)NCBI
RefSeq Acc Id: XM_055107937   ⟹   XP_054963912
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,094,019 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,971 - 71,159,208 (+)NCBI
RefSeq Acc Id: XM_055107938   ⟹   XP_054963913
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21271,093,845 - 71,155,256 (+)NCBI
NHGRI_mPanPan12A71,097,797 - 71,159,208 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008954506   ⟸   XM_008956258
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014199318   ⟸   XM_014343832
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954505   ⟸   XM_008956257
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954504   ⟸   XM_008956256
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954507   ⟸   XM_008956259
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034809058   ⟸   XM_034953167
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000009117   ⟸   ENSPPAT00000031757
RefSeq Acc Id: XP_054963913   ⟸   XM_055107938
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054963912   ⟸   XM_055107937
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZZH8 (UniProtKB/TrEMBL)
Protein Domains
Translin-associated factor X-interacting protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027781 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031757.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.30 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Clathrin_H-chain_linker UniProtKB/TrEMBL
  CLHC1 UniProtKB/TrEMBL
  TSNAXIP1_N UniProtKB/TrEMBL
KEGG Report pps:100985201 UniProtKB/TrEMBL
NCBI Gene CLHC1 ENTREZGENE
PANTHER CLATHRIN HEAVY CHAIN RELATED UniProtKB/TrEMBL
  PTHR10292:SF11 UniProtKB/TrEMBL
Pfam Clathrin_H_link UniProtKB/TrEMBL
  TSNAXIP1_N UniProtKB/TrEMBL
PIRSF Clathrin_H-chain-rel UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R8ZZH8 ENTREZGENE, UniProtKB/TrEMBL