GLMP (glycosylated lysosomal membrane protein) - Rat Genome Database

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Gene: GLMP (glycosylated lysosomal membrane protein) Pan paniscus
Analyze
Symbol: GLMP
Name: glycosylated lysosomal membrane protein
RGD ID: 11889628
Description: INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); protein localization to lysosome (inferred); protein stabilization (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (inferred); lysosomal membrane (inferred); lysosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysosomal protein NCU-G1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,549,739 - 93,556,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,281,701 - 93,284,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,635,614 - 131,638,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,465,671 - 135,468,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,465,671 - 135,468,666 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
lysosomal membrane  (IEA)
lysosome  (IEA)
membrane  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GLMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,549,739 - 93,556,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,281,701 - 93,284,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,635,614 - 131,638,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,465,671 - 135,468,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,465,671 - 135,468,666 (-)Ensemblpanpan1.1panPan2
GLMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,292,688 - 156,295,679 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,290,089 - 156,295,689 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,262,479 - 156,265,470 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,529,108 - 154,532,073 (-)NCBINCBI36Build 36hg18NCBI36
Celera1129,335,452 - 129,338,417 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,623,137 - 127,626,139 (-)NCBIHuRef
CHM1_11157,658,437 - 157,661,439 (-)NCBICHM1_1
T2T-CHM13v2.01155,431,151 - 155,434,142 (-)NCBIT2T-CHM13v2.0
Glmp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,232,330 - 88,235,938 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,232,330 - 88,238,620 (+)EnsemblGRCm39 Ensembl
GRCm38388,325,023 - 88,328,631 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,325,023 - 88,331,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,128,945 - 88,132,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,410,950 - 88,414,558 (+)NCBIMGSCv36mm8
Celera388,364,597 - 88,368,205 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.8NCBI
Glmp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,092,098 - 176,095,688 (+)NCBIGRCr8
mRatBN7.22173,794,273 - 173,797,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,794,255 - 173,799,960 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,938,666 - 180,942,256 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,961,024 - 178,964,615 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,561,075 - 173,564,669 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,697,528 - 187,701,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,697,523 - 187,701,118 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,100,471 - 207,104,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,438,070 - 180,441,660 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,388,175 - 180,391,765 (+)NCBI
Celera2167,739,194 - 167,742,784 (+)NCBICelera
Cytogenetic Map2q34NCBI
Glmp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,437,245 - 2,439,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,436,718 - 2,439,988 (-)NCBIChiLan1.0ChiLan1.0
GLMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,588,024 - 41,590,857 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,588,075 - 41,590,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,075,978 - 41,078,807 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,452,556 - 41,455,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,452,578 - 41,455,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,233,941 - 41,236,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,287,155 - 41,289,983 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,571,218 - 41,574,046 (+)NCBIUU_Cfam_GSD_1.0
Glmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,495,719 - 26,498,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,524,678 - 5,529,025 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,526,101 - 5,528,984 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,758,809 - 93,763,912 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,758,939 - 93,763,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,459,007 - 102,461,978 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,566,424 - 7,572,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,566,538 - 7,573,843 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,862,240 - 6,865,246 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glmp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,568,551 - 1,570,924 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,568,096 - 1,571,001 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033741   ⟹   ENSPPAP00000011086
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1135,465,671 - 135,468,666 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033742   ⟹   ENSPPAP00000011087
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1135,465,671 - 135,468,666 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033746   ⟹   ENSPPAP00000011091
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1135,465,995 - 135,468,628 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033748   ⟹   ENSPPAP00000011093
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1135,466,089 - 135,468,628 (-)Ensembl
RefSeq Acc Id: XM_003821065   ⟹   XP_003821113
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,739 - 93,552,793 (+)NCBI
NHGRI_mPanPan1193,281,701 - 93,284,692 (+)NCBI
Mhudiblu_PPA_v01131,635,615 - 131,638,610 (-)NCBI
PanPan1.11135,465,671 - 135,468,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003821067   ⟹   XP_003821115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,800 - 93,552,793 (+)NCBI
NHGRI_mPanPan1193,281,701 - 93,284,692 (+)NCBI
Mhudiblu_PPA_v01131,635,614 - 131,638,610 (-)NCBI
PanPan1.11135,465,671 - 135,468,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024926472   ⟹   XP_024782240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,800 - 93,552,793 (+)NCBI
NHGRI_mPanPan1193,281,707 - 93,284,692 (+)NCBI
Mhudiblu_PPA_v01131,635,614 - 131,638,610 (-)NCBI
PanPan1.11135,465,671 - 135,468,666 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010112217
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,800 - 93,555,368 (+)NCBI
RefSeq Acc Id: XR_010112219
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,793 - 93,556,522 (+)NCBI
RefSeq Acc Id: XR_010112220
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,739 - 93,555,368 (+)NCBI
RefSeq Acc Id: XR_010112221
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2193,549,800 - 93,556,522 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003821113 (Get FASTA)   NCBI Sequence Viewer  
  XP_003821115 (Get FASTA)   NCBI Sequence Viewer  
  XP_024782240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011086.1
  ENSPPAP00000011087.1
  ENSPPAP00000011091.1
  ENSPPAP00000011093.1
Reference Protein Sequences
RefSeq Acc Id: XP_003821115   ⟸   XM_003821067
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003821113   ⟸   XM_003821065
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024782240   ⟸   XM_024926472
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSPPAP00000011091   ⟸   ENSPPAT00000033746
RefSeq Acc Id: ENSPPAP00000011093   ⟸   ENSPPAT00000033748
RefSeq Acc Id: ENSPPAP00000011087   ⟸   ENSPPAT00000033742
RefSeq Acc Id: ENSPPAP00000011086   ⟸   ENSPPAT00000033741


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033741.1 UniProtKB/TrEMBL
  ENSPPAT00000033742.1 UniProtKB/TrEMBL
  ENSPPAT00000033746.1 UniProtKB/TrEMBL
  ENSPPAT00000033748.1 UniProtKB/TrEMBL
InterPro NCU-G1 UniProtKB/TrEMBL
KEGG Report pps:100978499 UniProtKB/TrEMBL
NCBI Gene GLMP ENTREZGENE
PANTHER GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN UniProtKB/TrEMBL
  PTHR31981 UniProtKB/TrEMBL
Pfam NCU-G1 UniProtKB/TrEMBL
UniProt A0A2R9A1F5_PANPA UniProtKB/TrEMBL
  A0A2R9A1I6_PANPA UniProtKB/TrEMBL
  A0A2R9A6V4_PANPA UniProtKB/TrEMBL
  A0A2R9A6V9_PANPA UniProtKB/TrEMBL