ABCC11 (ATP binding cassette subfamily C member 11) - Rat Genome Database

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Gene: ABCC11 (ATP binding cassette subfamily C member 11) Pan paniscus
Analyze
Symbol: ABCC11
Name: ATP binding cassette subfamily C member 11
RGD ID: 11889013
Description: ENCODES a protein that exhibits ABC-type bile acid transporter activity (inferred); ABC-type glutathione S-conjugate transporter activity (inferred); ABC-type transporter activity (inferred); INVOLVED IN bile acid and bile salt transport (inferred); leukotriene transport (inferred); organic anion transport (inferred); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); glycogen storage disease IXB (ortholog); FOUND IN apical plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family C member 11
RGD Orthologs
Human
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21857,628,832 - 57,695,145 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11663,534,199 - 63,600,514 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01628,434,749 - 28,513,110 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11647,326,502 - 47,408,690 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1647,326,502 - 47,408,690 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21857,628,832 - 57,695,145 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11663,534,199 - 63,600,514 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01628,434,749 - 28,513,110 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11647,326,502 - 47,408,690 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1647,326,502 - 47,408,690 (-)Ensemblpanpan1.1panPan2
ABCC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381648,164,819 - 48,247,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1648,165,773 - 48,247,568 (-)EnsemblGRCh38hg38GRCh38
GRCh371648,199,684 - 48,281,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361646,758,323 - 46,826,589 (-)NCBINCBI36Build 36hg18NCBI36
Build 341646,758,322 - 46,826,589NCBI
Celera1632,707,949 - 32,776,213 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1634,090,982 - 34,159,243 (-)NCBIHuRef
CHM1_11649,608,716 - 49,676,972 (-)NCBICHM1_1
T2T-CHM13v2.01653,961,650 - 54,046,163 (-)NCBIT2T-CHM13v2.0
ABCC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,805,660 - 66,875,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,817,151 - 66,875,988 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,381,823 - 63,452,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,363,904 - 67,434,572 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,365,969 - 67,434,568 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1264,177,323 - 64,247,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,200,922 - 65,271,416 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,088,680 - 66,159,072 (+)NCBIUU_Cfam_GSD_1.0
Abcc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934958,115,207 - 58,177,463 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364751,411,996 - 1,473,868 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,465,192 - 36,546,976 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1636,462,190 - 36,546,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ABCC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1533,966,802 - 34,045,874 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl533,967,166 - 34,032,184 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604742,496,881 - 42,562,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065634   ⟹   ENSPPAP00000042704
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1647,326,502 - 47,408,690 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000065637   ⟹   ENSPPAP00000042707
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1647,326,502 - 47,405,073 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000065639   ⟹   ENSPPAP00000042709
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1647,326,870 - 47,392,809 (-)Ensembl
RefSeq Acc Id: XM_034940111   ⟹   XP_034796002
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21857,628,832 - 57,695,145 (-)NCBI
NHGRI_mPanPan11663,534,199 - 63,600,514 (-)NCBI
Mhudiblu_PPA_v01628,434,749 - 28,501,061 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034796002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042704.1
  ENSPPAP00000042707.1
  ENSPPAP00000042709.1
Reference Protein Sequences
RefSeq Acc Id: XP_034796002   ⟸   XM_034940111
- UniProtKB: A0A2R9CL56 (UniProtKB/TrEMBL),   A0A2R9CL62 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000042709   ⟸   ENSPPAT00000065639
RefSeq Acc Id: ENSPPAP00000042707   ⟸   ENSPPAT00000065637
RefSeq Acc Id: ENSPPAP00000042704   ⟸   ENSPPAT00000065634
Protein Domains
ABC transmembrane type-1   ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043908 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065634.1 UniProtKB/TrEMBL
  ENSPPAT00000065637.1 UniProtKB/TrEMBL
  ENSPPAT00000065639.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCC11 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY C UniProtKB/TrEMBL
  PTHR24223:SF168 UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A2R9CL56 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CL62 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CSZ7_PANPA UniProtKB/TrEMBL