LOC100972235 (putative F-box/LRR-repeat protein 21) - Rat Genome Database

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Gene: LOC100972235 (putative F-box/LRR-repeat protein 21) Pan paniscus
Analyze
Symbol: LOC100972235
Name: putative F-box/LRR-repeat protein 21
RGD ID: 11888805
Description: INVOLVED IN entrainment of circadian clock by photoperiod (ortholog); protein ubiquitination (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); SCF ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box and leucine rich repeat protein 21; F-box/LRR-repeat protein 21; FBXL21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24131,217,387 - 131,238,153 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15129,356,947 - 129,377,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05131,321,680 - 131,342,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15137,465,586 - 137,482,373 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100972235
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24131,217,387 - 131,238,153 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15129,356,947 - 129,377,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05131,321,680 - 131,342,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15137,465,586 - 137,482,373 (+)NCBIpanpan1.1PanPan1.1panPan2
FBXL21P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385135,930,297 - 135,941,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5135,934,368 - 135,941,671 (+)EnsemblGRCh38hg38GRCh38
GRCh375135,265,986 - 135,277,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365135,300,162 - 135,305,266 (+)NCBINCBI36Build 36hg18NCBI36
Build 345135,300,161 - 135,305,266NCBI
Celera5131,390,736 - 131,402,098 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5130,454,477 - 130,465,824 (+)NCBIHuRef
CHM1_15134,698,629 - 134,709,992 (+)NCBICHM1_1
T2T-CHM13v2.05136,452,800 - 136,464,501 (+)NCBIT2T-CHM13v2.0
Fbxl21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391356,670,201 - 56,685,711 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1356,670,285 - 56,685,711 (+)EnsemblGRCm39 Ensembl
GRCm381356,522,388 - 56,537,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1356,522,472 - 56,537,898 (+)EnsemblGRCm38mm10GRCm38
MGSCv371356,623,869 - 56,639,147 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361356,532,130 - 56,547,408 (+)NCBIMGSCv36mm8
Celera1357,585,875 - 57,601,152 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.07NCBI
Fbxl21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,063,731 - 8,082,920 (-)NCBIGRCr8
mRatBN7.2178,060,412 - 8,077,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,060,414 - 8,073,359 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,079,196 - 8,091,275 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,610,824 - 9,622,813 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,075,596 - 8,087,673 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,505,771 - 8,520,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,505,996 - 8,520,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01710,681,628 - 10,695,804 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,011,345 - 14,022,829 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11714,011,848 - 14,025,798 (-)NCBI
Celera178,155,338 - 8,166,953 (-)NCBICelera
Cytogenetic Map17p14NCBI
Fbxl21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540830,997,793 - 31,012,276 (+)NCBIChiLan1.0ChiLan1.0
FBXL21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11123,846,512 - 23,859,141 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1122,594,423 - 22,606,896 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01124,662,792 - 24,675,677 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11123,334,198 - 23,365,344 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01123,216,105 - 23,228,985 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01123,850,183 - 23,878,742 (+)NCBIUU_Cfam_GSD_1.0
LOC101973554
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213124,006,075 - 124,023,450 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365973,037,282 - 3,045,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.12138,097,009 - 138,108,284 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22143,765,732 - 143,768,951 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL21P
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12338,680,722 - 38,692,592 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603439,216,667 - 39,224,884 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473311,174,526 - 11,186,938 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034960549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034960549   ⟹   XP_034816440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24131,217,387 - 131,238,153 (+)NCBI
NHGRI_mPanPan15129,356,947 - 129,377,713 (+)NCBI
Mhudiblu_PPA_v05131,321,680 - 131,342,838 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034816440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038688.1
Reference Protein Sequences
RefSeq Acc Id: XP_034816440   ⟸   XM_034960549
- UniProtKB: A0A2R9CCG6 (UniProtKB/TrEMBL)
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042058 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061593.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  Ribonuclease Inhibitor UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene FBXL21 ENTREZGENE
PANTHER ES1 PROTEIN HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  F-BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP F-box domain UniProtKB/TrEMBL
  RNI-like UniProtKB/TrEMBL
UniProt A0A2R9CCG6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100972235  putative F-box/LRR-repeat protein 21  LOC100972235  F-box/LRR-repeat protein 21  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100972235  F-box/LRR-repeat protein 21  FBXL21  F-box and leucine rich repeat protein 21  Symbol and/or name change 5135510 APPROVED