XG (Xg glycoprotein (Xg blood group)) - Rat Genome Database

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Gene: XG (Xg glycoprotein (Xg blood group)) Pan paniscus
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Symbol: XG
Name: Xg glycoprotein (Xg blood group)
RGD ID: 11888479
Description: INVOLVED IN homotypic cell-cell adhesion (inferred); positive regulation of neutrophil extravasation (inferred); T cell extravasation (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycoprotein Xg; LOC129395623; uncharacterized LOC129395623; Xg blood group
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X2,493,546 - 2,558,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1-v2Y44,342,228 - 44,431,321 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X2,499,160 - 2,561,987 (+)NCBINHGRI_mPanPan1
PanPan1.1X2,705,466 - 2,768,719 (+)NCBIpanpan1.1PanPan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
XG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X2,493,546 - 2,558,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1-v2Y44,342,228 - 44,431,321 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X2,499,160 - 2,561,987 (+)NCBINHGRI_mPanPan1
PanPan1.1X2,705,466 - 2,768,719 (+)NCBIpanpan1.1PanPan1.1panPan2
XG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X2,752,040 - 2,816,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX2,752,040 - 2,816,500 (+)EnsemblGRCh38hg38GRCh38
GRCh37X2,670,081 - 2,734,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X2,680,115 - 2,743,968 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X2,663,475 - 2,727,327NCBI
CeleraX6,950,542 - 7,014,968 (+)NCBICelera
Cytogenetic MapXp22.33NCBI
HuRefX612,013 - 676,908 (+)NCBIHuRef
CHM1_1X2,701,251 - 2,765,741 (+)NCBICHM1_1
T2T-CHM13v2.0X2,365,029 - 2,429,443 (+)NCBIT2T-CHM13v2.0
Xg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554991,654,037 - 1,684,150 (+)NCBIChiLan1.0ChiLan1.0
XG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X1,437,659 - 1,464,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX1,438,006 - 1,463,111 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX1,388,319 - 1,415,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X1,361,142 - 1,388,076 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X1,351,619 - 1,378,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X1,368,709 - 1,395,486 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X1,404,195 - 1,431,793 (+)NCBIUU_Cfam_GSD_1.0
Xg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404953823,405 - 841,478 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366443,535,525 - 3,544,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,204 - 36,584 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1Y7,661,275 - 7,691,114 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
XG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X898,288 - 1,018,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX899,262 - 1,018,013 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660562,838,592 - 2,903,332 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248341,199,210 - 1,239,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003814386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003814387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034951344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY459389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY459407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY459415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003814386   ⟹   XP_003814434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,602 - 2,558,315 (+)NCBI
NHGRI_mPanPan1X2,499,160 - 2,561,987 (+)NCBI
PanPan1.1X2,705,466 - 2,768,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003814387   ⟹   XP_003814435
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,559 - 2,558,315 (+)NCBI
NHGRI_mPanPan1X2,499,164 - 2,561,987 (+)NCBI
PanPan1.1X2,705,466 - 2,768,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034951344   ⟹   XP_034807235
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,557 - 2,558,315 (+)NCBI
NHGRI_mPanPan1X2,499,163 - 2,561,987 (+)NCBI
RefSeq Acc Id: XM_063601861   ⟹   XP_063457931
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,602 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601862   ⟹   XP_063457932
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,551 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601863   ⟹   XP_063457933
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,495,540 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601864   ⟹   XP_063457934
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,495,373 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601865   ⟹   XP_063457935
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,546 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601866   ⟹   XP_063457936
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,554 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601867   ⟹   XP_063457937
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,493,552 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063601868   ⟹   XP_063457938
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X2,495,536 - 2,558,315 (+)NCBI
RefSeq Acc Id: XM_063602034   ⟹   XP_063458104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2Y44,342,228 - 44,431,321 (-)NCBI
RefSeq Acc Id: XM_063602035   ⟹   XP_063458105
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2Y44,365,701 - 44,431,320 (-)NCBI
RefSeq Acc Id: XP_003814434   ⟸   XM_003814386
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AHM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003814435   ⟸   XM_003814387
- Peptide Label: isoform X6
- UniProtKB: A0A2R9APR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034807235   ⟸   XM_034951344
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063457935   ⟸   XM_063601865
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063457932   ⟸   XM_063601862
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063457937   ⟸   XM_063601867
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063457936   ⟸   XM_063601866
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063457931   ⟸   XM_063601861
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063457934   ⟸   XM_063601864
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063457938   ⟸   XM_063601868
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063457933   ⟸   XM_063601863
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063458104   ⟸   XM_063602034
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063458105   ⟸   XM_063602035
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031518 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039550.1 UniProtKB/TrEMBL
  ENSPPAT00000039553.1 UniProtKB/TrEMBL
InterPro CD99L2 UniProtKB/TrEMBL
KEGG Report pps:100995268 UniProtKB/TrEMBL
NCBI Gene XG ENTREZGENE
PANTHER GLYCOPROTEIN XG UniProtKB/TrEMBL
  PTHR15076 UniProtKB/TrEMBL
Pfam CD99L2 UniProtKB/TrEMBL
UniProt A0A2R9AHM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9APR0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-14 XG  Xg glycoprotein (Xg blood group)  LOC129395623  uncharacterized LOC129395623  Data Merged 737654 PROVISIONAL
2018-05-01 XG  Xg glycoprotein (Xg blood group)    Xg blood group  Symbol and/or name change 5135510 APPROVED