YOD1 (YOD1 deubiquitinase) - Rat Genome Database

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Gene: YOD1 (YOD1 deubiquitinase) Pan paniscus
Analyze
Symbol: YOD1
Name: YOD1 deubiquitinase
RGD ID: 11887220
Description: ENCODES a protein that exhibits Lys48-specific deubiquitinase activity (ortholog); thiol-dependent deubiquitinase (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); macroautophagy (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin thioesterase OTU1; YOD1 OTU deubiquinating enzyme 1 homolog
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11186,925,034 - 186,932,545 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,930,209 - 186,932,225 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01182,646,727 - 182,655,141 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
YOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11186,925,034 - 186,932,545 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,930,209 - 186,932,225 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01182,646,727 - 182,655,141 (-)NCBIMhudiblu_PPA_v0panPan3
YOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1207,043,849 - 207,052,980 (-)EnsemblGRCh38hg38GRCh38
GRCh381207,043,849 - 207,053,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371207,217,194 - 207,226,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,283,817 - 205,291,045 (-)NCBINCBI36hg18NCBI36
Celera1180,468,698 - 180,475,926 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1177,914,550 - 177,923,681 (-)NCBIHuRef
CHM1_11208,489,805 - 208,498,936 (-)NCBICHM1_1
Yod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,645,064 - 130,649,810 (+)NCBIGRCm39mm39
GRCm39 Ensembl1130,645,064 - 130,652,095 (+)Ensembl
GRCm381130,717,327 - 130,722,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,717,327 - 130,724,358 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,613,904 - 132,618,650 (+)NCBIGRCm37mm9NCBIm37
MGSCv361132,544,873 - 132,549,566 (+)NCBImm8
Celera1133,340,721 - 133,345,469 (+)NCBICelera
Cytogenetic Map1E4NCBI
Yod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21342,175,313 - 42,177,030 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1342,174,820 - 42,177,205 (+)Ensembl
Rnor_6.01347,441,296 - 47,443,013 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,440,803 - 47,443,188 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,529,960 - 52,531,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,653,274 - 43,654,991 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11343,667,316 - 43,669,034 (+)NCBI
Celera1342,526,067 - 42,527,784 (+)NCBICelera
Cytogenetic Map13q13NCBI
YOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,185,650 - 6,194,005 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,190,752 - 6,193,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,749,059 - 5,757,297 (-)NCBI
ROS_Cfam_1.075,874,444 - 5,882,763 (-)NCBI
UMICH_Zoey_3.175,808,168 - 5,816,424 (-)NCBI
UNSW_CanFamBas_1.075,909,780 - 5,918,003 (-)NCBI
UU_Cfam_GSD_1.075,949,935 - 5,958,184 (-)NCBI
YOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,672,648 - 67,681,843 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,672,640 - 67,681,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2974,057,174 - 74,061,141 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,307,703 - 22,311,919 (+)NCBI
ChlSab1.1 Ensembl2522,307,778 - 22,309,716 (+)Ensembl
Vero_WHO_p1.0NW_02366605522,949,362 - 22,954,186 (+)NCBI
Yod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248074,443,653 - 4,448,759 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000044240   ⟹   ENSPPAP00000021438
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1186,930,209 - 186,932,225 (-)Ensembl
RefSeq Acc Id: XM_003822904   ⟹   XP_003822952
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11186,925,034 - 186,932,545 (-)NCBI
Mhudiblu_PPA_v01182,646,727 - 182,653,966 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034945559   ⟹   XP_034801450
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01182,649,574 - 182,655,141 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003822952 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801450 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003822952   ⟸   XM_003822904
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034801450   ⟸   XM_034945559
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000021438   ⟸   ENSPPAT00000044240


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033947 Ensembl
NCBI Gene YOD1 ENTREZGENE