CLDN11 (claudin 11) - Rat Genome Database

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Gene: CLDN11 (claudin 11) Pan paniscus
Analyze
Symbol: CLDN11
Name: claudin 11
RGD ID: 11886845
Description: ENCODES a protein that exhibits identical protein binding (inferred); structural molecule activity (inferred); INVOLVED IN axon ensheathment (ortholog); cell adhesion (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Fanconi syndrome (ortholog); genetic disease (ortholog); FOUND IN anchoring junction (inferred); axon (inferred); basal part of cell (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: claudin-11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,313,680 - 168,328,673 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13168,318,403 - 168,333,400 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03167,432,856 - 167,448,053 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13175,621,472 - 175,636,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3175,621,472 - 175,908,350 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CLDN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,313,680 - 168,328,673 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13168,318,403 - 168,333,400 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03167,432,856 - 167,448,053 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13175,621,472 - 175,636,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3175,621,472 - 175,908,350 (+)Ensemblpanpan1.1panPan2
CLDN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383170,418,868 - 170,434,691 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3170,418,868 - 170,454,733 (+)EnsemblGRCh38hg38GRCh38
GRCh373170,136,656 - 170,152,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363171,619,359 - 171,634,581 (+)NCBINCBI36Build 36hg18NCBI36
Build 343171,619,366 - 171,634,585NCBI
Celera3168,535,836 - 168,551,662 (+)NCBICelera
Cytogenetic Map3q26.2NCBI
HuRef3167,506,076 - 167,521,977 (+)NCBIHuRef
CHM1_13170,099,809 - 170,115,631 (+)NCBICHM1_1
T2T-CHM13v2.03173,203,212 - 173,219,032 (+)NCBIT2T-CHM13v2.0
Cldn11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39331,204,069 - 31,218,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl331,204,069 - 31,218,473 (+)EnsemblGRCm39 Ensembl
GRCm38331,149,920 - 31,164,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl331,149,920 - 31,164,324 (+)EnsemblGRCm38mm10GRCm38
MGSCv37331,048,913 - 31,063,240 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36331,340,869 - 31,355,196 (+)NCBIMGSCv36mm8
Celera331,063,978 - 31,078,367 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.14NCBI
Cldn11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82114,136,234 - 114,149,539 (-)NCBIGRCr8
mRatBN7.22112,207,745 - 112,221,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2112,207,745 - 112,221,050 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2118,854,213 - 118,867,509 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02116,966,771 - 116,980,065 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02111,676,502 - 111,689,756 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02115,823,541 - 115,836,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2115,823,538 - 115,836,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02135,520,050 - 135,533,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42116,626,427 - 116,639,732 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12116,571,388 - 116,584,694 (-)NCBI
Celera2107,394,882 - 107,408,187 (-)NCBICelera
Cytogenetic Map2q24NCBI
Cldn11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955420580,588 - 595,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955420580,588 - 595,052 (+)NCBIChiLan1.0ChiLan1.0
CLDN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13434,912,903 - 34,929,441 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3434,912,449 - 34,928,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3443,924,891 - 43,941,855 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03434,994,383 - 35,011,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3434,994,046 - 35,011,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13434,937,785 - 34,954,501 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03434,907,493 - 34,924,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03435,171,151 - 35,187,831 (+)NCBIUU_Cfam_GSD_1.0
Cldn11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602101,534,109 - 101,549,597 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365932,071,882 - 2,087,877 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365932,072,368 - 2,087,820 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13109,075,452 - 109,090,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113109,075,672 - 109,089,097 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213117,956,912 - 117,970,337 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11518,991,734 - 19,006,902 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1518,991,042 - 19,006,866 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606327,767,141 - 27,782,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473048,458,512 - 48,474,734 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473048,458,593 - 48,473,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000027898   ⟹   ENSPPAP00000006520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3175,621,472 - 175,636,782 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000027909   ⟹   ENSPPAP00000006524
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3175,621,665 - 175,908,350 (+)Ensembl
RefSeq Acc Id: XM_003831925   ⟹   XP_003831973
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,313,680 - 168,328,673 (+)NCBI
NHGRI_mPanPan13168,318,403 - 168,333,400 (+)NCBI
Mhudiblu_PPA_v03167,432,856 - 167,448,053 (+)NCBI
PanPan1.13175,621,472 - 175,636,782 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957305   ⟹   XP_008955553
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,315,798 - 168,328,673 (+)NCBI
NHGRI_mPanPan13168,320,522 - 168,333,400 (+)NCBI
Mhudiblu_PPA_v03167,435,167 - 167,448,053 (+)NCBI
PanPan1.13175,623,814 - 175,636,782 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831973 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955553 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006520
  ENSPPAP00000006520.1
  ENSPPAP00000006524.1
RefSeq Acc Id: XP_003831973   ⟸   XM_003831925
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZNI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955553   ⟸   XM_008957305
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000006520   ⟸   ENSPPAT00000027898
RefSeq Acc Id: ENSPPAP00000006524   ⟸   ENSPPAT00000027909


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000027898.1 UniProtKB/TrEMBL
  ENSPPAT00000027909.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin11 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report pps:100980857 UniProtKB/TrEMBL
NCBI Gene CLDN11 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  PTHR12002:SF6 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN UniProtKB/TrEMBL
  CLAUDIN11 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R8ZNI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZUG9_PANPA UniProtKB/TrEMBL