Gene: IFFO2 (intermediate filament family orphan 2) Pan paniscus |
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Analyze |
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Symbol: |
IFFO2 |
Name: |
intermediate filament family orphan 2 |
RGD ID: |
11885809 |
Description: |
ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 208,158,601 - 208,211,466 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 207,275,160 - 207,328,030 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 17,862,556 - 17,914,686 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 18,911,089 - 18,963,375 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
IFFO2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 208,158,601 - 208,211,466 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 207,275,160 - 207,328,030 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 17,862,556 - 17,914,686 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 18,911,089 - 18,963,375 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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IFFO2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 18,904,280 - 18,956,676 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 18,904,280 - 18,956,676 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 19,230,774 - 19,283,170 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 19,103,232 - 19,155,413 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 17,558,090 - 17,609,830 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | p36.13 | NCBI | | | | | HuRef | 1 | 17,474,949 - 17,526,798 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 19,340,139 - 19,392,023 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 18,724,088 - 18,776,570 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Iffo2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 4 | 139,257,859 - 139,347,693 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 139,257,859 - 139,347,693 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 139,530,548 - 139,620,382 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 139,530,548 - 139,620,382 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 4 | 139,131,051 - 139,176,297 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 138,875,289 - 138,889,173 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 141,367,925 - 141,414,566 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | D3 | NCBI | | | | | cM Map | 4 | 70.73 | NCBI | | | | |
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Iffo2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 5 | 157,114,089 - 157,160,135 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 151,830,900 - 151,876,948 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 151,830,701 - 151,925,345 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 5 | 154,529,601 - 154,575,372 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 5 | 156,303,975 - 156,349,745 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 5 | 156,285,042 - 156,330,699 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 5 | 158,042,587 - 158,083,311 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 158,042,587 - 158,135,733 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 161,781,672 - 161,822,396 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 158,404,342 - 158,418,394 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 5 | 150,208,652 - 150,249,725 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q36 | NCBI | | | | |
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Iffo2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955527 | 294,488 - 333,823 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955527 | 294,950 - 332,716 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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IFFO2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 2 | 79,636,428 - 79,685,207 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 2 | 79,636,302 - 79,680,696 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 2 | 76,150,872 - 76,199,390 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 2 | 80,259,120 - 80,303,910 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 2 | 80,258,746 - 80,303,142 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 2 | 77,019,534 - 77,067,979 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 2 | 78,029,359 - 78,078,057 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 2 | 79,100,177 - 79,148,729 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Iffo2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405058 | 39,423,560 - 39,456,255 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936474 | 5,248,336 - 5,291,096 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936474 | 5,248,342 - 5,290,908 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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IFFO2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 77,406,372 - 77,456,229 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 77,406,367 - 77,458,234 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 71,470,899 - 71,540,600 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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IFFO2 (Chlorocebus sabaeus - green monkey) |
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Iffo2 (Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
RefSeq Acc Id: |
XM_034956823 ⟹ XP_034812714 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 1 | 208,158,601 - 208,211,466 (+) | NCBI | NHGRI_mPanPan1 | 1 | 207,275,160 - 207,328,030 (+) | NCBI | Mhudiblu_PPA_v0 | 1 | 17,862,556 - 17,914,685 (-) | NCBI |
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RefSeq Acc Id: |
XM_034956824 ⟹ XP_034812715 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 1 | 208,159,289 - 208,211,466 (+) | NCBI | NHGRI_mPanPan1 | 1 | 207,275,872 - 207,328,030 (+) | NCBI | Mhudiblu_PPA_v0 | 1 | 17,862,556 - 17,914,680 (-) | NCBI |
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RefSeq Acc Id: |
XM_034956832 ⟹ XP_034812723 |
Type: |
CODING |
Position: |
Bonobo Assembly | Chr | Position (strand) | Source |
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NHGRI_mPanPan1-v2 | 1 | 208,159,284 - 208,211,466 (+) | NCBI | NHGRI_mPanPan1 | 1 | 207,275,163 - 207,328,030 (+) | NCBI | Mhudiblu_PPA_v0 | 1 | 17,862,556 - 17,914,686 (-) | NCBI |
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RefSeq Acc Id: |
XP_034812723 ⟸ XM_034956832 |
- Peptide Label: |
isoform X3 |
RefSeq Acc Id: |
XP_034812714 ⟸ XM_034956823 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_034812715 ⟸ XM_034956824 |
- Peptide Label: |
isoform X2 |
Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
NCBI Gene |
IFFO2 |
ENTREZGENE |
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