C3H3orf84 (chromosome 3 C3orf84 homolog)

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Gene: C3H3orf84 (chromosome 3 C3orf84 homolog) Pan paniscus

Analyze

Symbol:

C3H3orf84

Name:

chromosome 3 C3orf84 homolog

RGD ID:

11884751

Description:

ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

uncharacterized protein C3orf84 homolog

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,180,907 - 50,195,215 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,180,907 - 50,195,215 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,100,962 - 49,115,215 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy type 2P (ISO)

References

Genomics

Comparative Map Data

C3H3orf84
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,180,907 - 50,195,215 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,180,907 - 50,195,215 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,100,962 - 49,115,215 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

C3orf84
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	49,177,634 - 49,191,858 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	49,177,539 - 49,192,684 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	49,215,067 - 49,229,291 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,190,073 - 49,204,114 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	3	49,172,338 - 49,184,925 (-)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,273,028 - 49,287,244 (-)	NCBI		HuRef
CHM1_1	3	49,167,840 - 49,182,055 (-)	NCBI		CHM1_1

BC048562
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,313,681 - 108,323,282 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	108,313,681 - 108,323,285 (+)	Ensembl
GRCm38	9	108,436,482 - 108,446,083 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,436,482 - 108,446,086 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,338,813 - 108,348,414 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	108,294,585 - 108,304,189 (+)	NCBI			mm8
Celera	9	108,045,624 - 108,055,271 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

LOC680045
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	109,131,138 - 109,140,784 (+)	NCBI
Rnor_6.0 Ensembl	8	117,221,367 - 117,231,029 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	117,214,999 - 117,231,024 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	116,565,953 - 116,575,596 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	108,431,733 - 108,441,366 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

CUNH3orf84
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,163,353 - 1,198,237 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,163,399 - 1,172,197 (-)	NCBI	ChiLan1.0	ChiLan1.0

C20H3orf84
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	40,012,854 - 40,021,981 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	40,012,730 - 40,021,983 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

CUNH3orf84
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936529	872,150 - 884,123 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C13H3orf84
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,781,278 - 31,792,629 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,780,619 - 31,790,704 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,011,821 - 35,023,160 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH3orf84
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,579,771 - 10,594,148 (-)	NCBI
ChlSab1.1 Ensembl	22	10,579,776 - 10,593,388 (-)	Ensembl

CUNH3orf84
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,187,956 - 3,198,064 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000033099 ⟹ ENSPPAP00000010449

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	50,180,907 - 50,195,215 (-)	Ensembl

RefSeq Acc Id:

XM_003818374 ⟹ XP_003818422

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	3	50,180,907 - 50,195,215 (-)	NCBI
Mhudiblu_PPA_v0	3	49,100,962 - 49,115,215 (-)	NCBI

Sequence:

show sequence

AAATTGACCTCCAGAGATTCTCTTTCCTGAAGAAACCCTCCAAAAGACAAGAGGAAAGTTTGCC
TTTTCTGCTCCCTTCTTGGAAAGATGCAAAGTGCTTTAGTAGGCTCCTGGCACAACAATGGCTT
CTATGGGCACTACAGAAGCCAATTCAAGAGTGAAAGTGCTAGAGAATACCGCCTTGCAGCCAAG
CCCCAGCCTCCAGCAGTGTTCCTGCAGCGATGTCAGGAGCCGGCGCAGCAACACTTCTTCTCCA
AGCACGACAACCGTACTTCCTTTGACAAAGGTCCCTATTGCCTGCTGCAGGGAATCGGAAGGCG
GAAGGACCTGGAGTGCCTGTGGCAGCGGCACACCTTCCTGCGCTGGGCACCCTGTGAGATAGAG
TTGCGCCAGCAGGGGCCCCTGGAATCTTCTTACCAGGCTGATTTCAGACCAGGCCCAGGACTCA
GTGGCCTCCCCCAGCGCCTCGTCCACTTTGTGCAGGTCCAGCCTTCCCATACCAGGACCACCTA
CCAGCAGAACTTCTGCTGCCCATCCCAGGGTGGCCACTATGGCAGCTACAAGGTAGGGCCCCAG
GCGCCGGTCACTGACGTACTGCCTGACCTCCCAGGGATCCCAAGACCCAAGCTGCTGCAGCACT
ACCTTCATGCTGGGGTCTCTGAGTGTCTAAACTGGTCCAGAGCATTAAACAAGGACAGCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003818422	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_003818422 ⟸ XM_003818374

- Sequence:

show sequence

MQSALVGSWHNNGFYGHYRSQFKSESAREYRLAAKPQPPAVFLQRCQEPAQQHFFSKHDNRTSF
DKGPYCLLQGIGRRKDLECLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGPGLSGLPQRLV
HFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPRPKLLQHYLHAGVSE
CLNWSRALNKDS

hide sequence

RefSeq Acc Id:

ENSPPAP00000010449 ⟸ ENSPPAT00000033099

Protein Domains

HDNR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028447	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000010449	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000033099	UniProtKB/TrEMBL
InterPro	HDNR	UniProtKB/TrEMBL
KEGG Report	pps:100968606	UniProtKB/TrEMBL
NCBI Gene	C3H3orf84	ENTREZGENE
Pfam	HDNR	UniProtKB/TrEMBL
UniProt	A0A2R9A3Y7_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar