NOC3L (NOC3 like DNA replication regulator) - Rat Genome Database

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Gene: NOC3L (NOC3 like DNA replication regulator) Pan paniscus
Analyze
Symbol: NOC3L
Name: NOC3 like DNA replication regulator
RGD ID: 11884433
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN fat cell differentiation (ortholog); ASSOCIATED WITH focal segmental glomerulosclerosis (ortholog); genetic disease (ortholog); nephrotic syndrome (ortholog); FOUND IN mitochondrion (inferred); nuclear speck (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleolar complex associated 3 homolog; nucleolar complex protein 3 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28106,342,039 - 106,393,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110106,347,355 - 106,398,436 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01091,052,341 - 91,101,068 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,561,532 - 94,609,405 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,579,840 - 94,609,405 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NOC3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28106,342,039 - 106,393,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110106,347,355 - 106,398,436 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01091,052,341 - 91,101,068 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,561,532 - 94,609,405 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,579,840 - 94,609,405 (-)Ensemblpanpan1.1panPan2
NOC3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381094,314,907 - 94,362,939 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1094,333,226 - 94,362,959 (-)EnsemblGRCh38hg38GRCh38
GRCh371096,092,983 - 96,122,696 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361096,082,979 - 96,112,673 (-)NCBINCBI36Build 36hg18NCBI36
Build 341096,082,978 - 96,112,673NCBI
Celera1089,833,093 - 89,862,784 (-)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,719,725 - 89,749,279 (-)NCBIHuRef
CHM1_11096,375,003 - 96,404,697 (-)NCBICHM1_1
T2T-CHM13v2.01095,193,999 - 95,242,036 (-)NCBIT2T-CHM13v2.0
Noc3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,776,565 - 38,808,754 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,776,572 - 38,807,681 (-)EnsemblGRCm39 Ensembl
GRCm381938,788,121 - 38,820,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,788,128 - 38,819,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv371938,862,618 - 38,893,727 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,854,275 - 38,884,344 (-)NCBIMGSCv36mm8
Celera1939,580,352 - 39,611,743 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1933.42NCBI
Noc3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,969,179 - 245,997,761 (-)NCBIGRCr8
mRatBN7.21236,556,037 - 236,585,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1236,556,789 - 236,585,318 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,980,241 - 245,008,463 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,873,950 - 251,902,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,712,210 - 244,740,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01257,469,538 - 257,498,844 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1257,469,538 - 257,498,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,962,014 - 264,990,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,108,787 - 243,137,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1233,648,166 - 233,676,694 (-)NCBICelera
Cytogenetic Map1q53NCBI
Noc3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955507828,157 - 859,655 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955507827,994 - 858,941 (-)NCBIChiLan1.0ChiLan1.0
NOC3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,484,224 - 8,519,840 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl288,484,226 - 8,519,692 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,661,916 - 8,697,287 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,748,476 - 8,784,171 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl288,752,697 - 8,784,137 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1288,464,715 - 8,500,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0288,496,024 - 8,531,701 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,666,416 - 8,702,358 (-)NCBIUU_Cfam_GSD_1.0
Noc3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,150,298 - 39,178,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936601782,901 - 816,185 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936601782,923 - 811,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOC3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,770,566 - 105,806,335 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,766,299 - 105,806,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214115,622,498 - 115,655,300 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOC3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1987,563,766 - 87,593,534 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl987,564,693 - 87,593,512 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604848,327,170 - 48,375,002 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Noc3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247375,709,710 - 5,740,598 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247375,692,010 - 5,740,747 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065289   ⟹   ENSPPAP00000042359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1094,579,840 - 94,609,405 (-)Ensembl
RefSeq Acc Id: XM_003825379   ⟹   XP_003825427
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,357,666 - 106,393,119 (-)NCBI
NHGRI_mPanPan110106,362,982 - 106,398,436 (-)NCBI
Mhudiblu_PPA_v01091,070,674 - 91,101,068 (-)NCBI
PanPan1.11094,579,840 - 94,609,405 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008620007
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,351,130 - 106,393,119 (-)NCBI
NHGRI_mPanPan110106,356,677 - 106,398,436 (-)NCBI
RefSeq Acc Id: XR_608285
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28106,342,039 - 106,393,119 (-)NCBI
NHGRI_mPanPan110106,347,355 - 106,398,436 (-)NCBI
Mhudiblu_PPA_v01091,052,341 - 91,101,068 (-)NCBI
PanPan1.11094,561,532 - 94,609,405 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003825427 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042359
  ENSPPAP00000042359.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825427   ⟸   XM_003825379
- UniProtKB: A0A2R9CK72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000042359   ⟸   ENSPPAT00000065289
Protein Domains
CCAAT-binding factor   Nucleolar complex-associated protein 3 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043755 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065289.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  CCAAT-binding_factor UniProtKB/TrEMBL
  Noc3_N UniProtKB/TrEMBL
  Nucleolar_cplx-assoc_3 UniProtKB/TrEMBL
KEGG Report pps:100993530 UniProtKB/TrEMBL
NCBI Gene NOC3L ENTREZGENE
PANTHER NUCLEOLAR COMPLEX PROTEIN 3 HOMOLOG UniProtKB/TrEMBL
  PTHR14428 UniProtKB/TrEMBL
Pfam CBF UniProtKB/TrEMBL
  NOC3p UniProtKB/TrEMBL
PIRSF Nucleolar_complex_p3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9CK72 ENTREZGENE, UniProtKB/TrEMBL